Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1626 |
Symbol | |
ID | 5170191 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | - |
Start bp | 1625902 |
End bp | 1627065 |
Gene Length | 1164 bp |
Protein Length | 387 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640564152 |
Product | type II and III secretion system protein |
Protein accession | YP_001245208 |
Protein GI | 148270748 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAAAAC TCAGTTTCGT TTTATTCGTA TTGATAGCGG TGGTGGTGAT AACGCAGGAG GAACCTCTTG TGAGCAACAT ATTCCAGGAT ACATACATTC TGGATGCCCT CTCAGACATC TCCGCACAGA CAGGAATTCC AATCATAGCG GACACTACTG TGACTGGCTT CATCACTATG GAGCTCAACG AAGTACCCTT AGAGCAGGCA CTGAAGATGA TCCTCATGCC TGGAGGGTAT GTTTTCAAAA AGATGGACGG GTTTTACTTC GTGGGATCAC CAGATCCAGC GAATCCCGCC TTCAGATACC TTGCAGTTAC AGGGACCTAC AAGTTGAAAT ACATAACCAC AGCCGATGCC CAGGAACTCT TGCCAGCAGT TTACAGGAAT TACGTCAGGT TCAACGAGAA GAACAACATG ATAACCATCA CAGCACCTGA AGAGATCATA CGGGAATTCG AGGAAGATCT CAAAAAGATA GACATCCCGA TACCACAGGT GAAGATCAGT GTGATCGTCA CAGAAATTTC CAGAGATTAT TCGAATGAAC TGGGATTGAA CAGTTTAGAT TATTCCTTCG GTTCCGGGCA GGAATTCAAC GAGAACTGGA CGGCTACTCT CGGTTTGGTA ACAGGAATCC TCAATGTTCA GACAGACGTT TTTGGCCAAA TTCTGGCAAA ATTAAAACTC CTCGAGGAAG ATCAGAAAGC GAAGATCACA GCCGATCCCT GGATCATCGT GAAGAGTGGA GAAAAGGCCT CTCTTTTCTT AGGGGAAAGA CAGGTTGTTC TCCTCGAGGC CGAAGGAGCG GTGAGCAGAA TCGAGTCCAT AGACGTTGGA GTGAGCATCG AGATTCAACC GCGTGTGATG GACAAAGAAG AACTCGAGCT TACACTCTCA CCAAAAGTCA GTCACTTCGC AGGAGAGAAA CTCGGAACAT TCGCTGTAAA ACAGAACGAA CTCTCTACAA CACTTTTCCT GAAAAATGGT CAGACCGTTG TGATCTCCGG TGCCACCATC GAAGACAGCG CCCAGACCGG CTCCGGTGTG CCCATATTGA ACAAGATCCC ACTCATACGA TACCTCTTCG GTGGTACAAC GAAAAAAGAT TCCCAAAAAG AACTCTACAT ATTCATCAAG GCGGAAATCC AGGGAAGTGA GTGA
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Protein sequence | MRKLSFVLFV LIAVVVITQE EPLVSNIFQD TYILDALSDI SAQTGIPIIA DTTVTGFITM ELNEVPLEQA LKMILMPGGY VFKKMDGFYF VGSPDPANPA FRYLAVTGTY KLKYITTADA QELLPAVYRN YVRFNEKNNM ITITAPEEII REFEEDLKKI DIPIPQVKIS VIVTEISRDY SNELGLNSLD YSFGSGQEFN ENWTATLGLV TGILNVQTDV FGQILAKLKL LEEDQKAKIT ADPWIIVKSG EKASLFLGER QVVLLEAEGA VSRIESIDVG VSIEIQPRVM DKEELELTLS PKVSHFAGEK LGTFAVKQNE LSTTLFLKNG QTVVISGATI EDSAQTGSGV PILNKIPLIR YLFGGTTKKD SQKELYIFIK AEIQGSE
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