Gene Tpet_1569 details

Gene Information

• Locus tag: Tpet_1569
• ID: 5170095
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga petrophila RKU-1
• Kingdom: Bacteria
• Replicon accession: NC_009486
• Strand: -
• Start bp: 1566308
• End bp: 1568239
• Gene Length: 1932 bp
• Protein Length: 643 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 640564095
• Product: diguanylate cyclase with PAS/PAC sensor
• Protein accession: YP_001245151
• Protein GI: 148270691
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain; [COG2202] FOG: PAS/PAC domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 36
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAC TCATCTGGCC GGTGCTCCTC GTGGGCACCG TACTTTTAAT CATTTATTCT 
TTCCTGATCG GCACCCCTCT TGAAATTCAC TTAGCGACTC GCTGGGAAAT TGCCCTTCCC 
AGAGTTCTTT TTCTTCTCGG ATCTTTTTTG CTGAACACTT TGTTTTCCCT GACAGGATCG 
TACGTGGTTC TTTTTGGAAG CGTTTCTTTG TTTCTCGGCG CGCTGATGAA TCTTCTGGAA 
TTTTTCTTCG CTTTTCCTTC TTTTTTCTAT ACAGTCAAAT TGATCTTTTA CGTGGCCGGT 
TCTCTTCTGC TTCTAATTGG AATCTTCAGA GTATTTTTAA AACTGAAAAG ATTCACCCTG 
ATGTTCAGAG GACTCTTCGA GGAAAACAAC GACATGGTGA TATACTACGA CCCATCTGGA 
AAGATCGTTG ATGTGAATCC AGCCGCTGAG AAATTCCTGG GATACACTCG CATCGAGCTT 
CTCGGAAAAA CCATAGAGGA GATTTCTAAG CCAGGTGAAG AAAGGGTATT GTTTCAAATC 
TTGAATTTTT CACAGAATGG TATAAAGACT CTGGAAAGGG AACTTCTCTC AAAGGATGGA 
AGAACCGTTC TGTGCGAGTG TAAATTGGCT CCGGTATATG AAGGAAAGAA GATCGCTATG 
ATTCAGGAAA TCGCACGCCC CATCGATGAT ATAAGGAAAA TAGAGGATCA GATCAGAAGA 
GGAAGAAAAA GATTCCTCAC TTATTTCAAC AACATTCCCG TTTTGAGTGT GATTCTGAGA 
GAAGATGGAA CGGTTGAAGA CGTGAACGAA GCAGGTTGCA AACTTCTTGG AGTGAACAGA 
GAACAGCTTC TGAACAAAAA CTGGTTCGAC ATGTTCCACG AAAGTTTTCC ACACGAAACT 
TTTGAAAGAT CCTTCAAAGA AAAAATGGTG CACGAAGGTA CCATAGATGG AAGAATCATA 
AGATGGGTGT TCATACCCCT TGAGGAGAAC AGAGTGATGG TAACAGGCCT TGACATCACT 
GAGTTAAAGG AAAATCTCAC CTCTCTGGAA GAAGACAAAA AATTCTATCA GCTTCTTCTG 
GATCTTTCAA AAAGCCTTCT ATCGCTCGGA TGGAACGATT TCGTGTTCAA ACAGTATCTT 
TTATCACTCG GTGAAGTGTT CGGTTCAAAG AGTGTGGCTC TGTACGAAAA AAAGAACGGG 
GATTTCGTTC TGACAGCCTC TCTCAACGGT TCTTTCGAAG AGATTTTGTC CAGGATACCG 
GAAGACATAG ATTGTGAGAA TAGAATGTTG AGAATTCCTC TTGAGTACGA AACAGATACT 
TTTGCAGTAC TCCTCATCGG CTGTGGAAAA ACCGATGAGA GACTTTTTGA GATGGCCAGA 
CTTTTGAAAA ATCACCTAGA ACTCATCTAC TGGAAATTGA AGGGGGAGGA GAGGATCCTC 
TGGCTCGCTG AACGCGATTC CCTAACTGGT GTGTACAACC GAGAAGCGTT CGAAAGTAGA 
CTCGCTTACC TCATCAACCT TTCAAAGAGG TACAGCAGAA AACTCTCCTT CGTCTTCATC 
GATCTTGATG ATTTCAAGCG TATAAACGAT TCAAAGGGCC ACCTGGTTGG AGATCGAGTT 
CTGAAAGAGT TTGTAAACAG ACTCACCTCA CTTCTGAGAA AATCGGATGT AGTTGGTAGA 
CTCGGGGGTG ACGAATTCGG TATCATACTC CCTGAAACGG ATCGAACAGG AGCGGAAATT 
CTCATGAAGA GAATAGAAGA GCACTTCAGA GAATCTGTTC CAGTGGATGG AGAATTGTTT 
TCAGTGAATT TCAGTTATGG TATCAGCGTG TTCCCCGAAG ACGGAGAAAG TGTGGAAGAA 
CTCCTGAAGG TCGCAGACGA AAGGATGTAC ATGAATAAAT TCAGCAAGAA GAGGGGGAGA 
GAGAATGTCT GA 

 

Protein sequence

MKKLIWPVLL VGTVLLIIYS FLIGTPLEIH LATRWEIALP RVLFLLGSFL LNTLFSLTGS 
YVVLFGSVSL FLGALMNLLE FFFAFPSFFY TVKLIFYVAG SLLLLIGIFR VFLKLKRFTL 
MFRGLFEENN DMVIYYDPSG KIVDVNPAAE KFLGYTRIEL LGKTIEEISK PGEERVLFQI 
LNFSQNGIKT LERELLSKDG RTVLCECKLA PVYEGKKIAM IQEIARPIDD IRKIEDQIRR 
GRKRFLTYFN NIPVLSVILR EDGTVEDVNE AGCKLLGVNR EQLLNKNWFD MFHESFPHET 
FERSFKEKMV HEGTIDGRII RWVFIPLEEN RVMVTGLDIT ELKENLTSLE EDKKFYQLLL 
DLSKSLLSLG WNDFVFKQYL LSLGEVFGSK SVALYEKKNG DFVLTASLNG SFEEILSRIP 
EDIDCENRML RIPLEYETDT FAVLLIGCGK TDERLFEMAR LLKNHLELIY WKLKGEERIL 
WLAERDSLTG VYNREAFESR LAYLINLSKR YSRKLSFVFI DLDDFKRIND SKGHLVGDRV 
LKEFVNRLTS LLRKSDVVGR LGGDEFGIIL PETDRTGAEI LMKRIEEHFR ESVPVDGELF 
SVNFSYGISV FPEDGESVEE LLKVADERMY MNKFSKKRGR ENV