| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1556 |
|---|
| Symbol | |
|---|
| ID | 5170192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1550644 |
|---|
| End bp | 1551645 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640564082 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_001245139 |
|---|
| Protein GI | 148270679 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0687903 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA AGTACGTTAC GATCAGAGAC ATAGCAGAGA AAGCGGGTGT TTCCATAAAC
ACAGTCTCAA GGGCACTCAA CAACAAGCCC GACATTAGCG AAGAAACCAG AAGAAAGATA
CTGAAAATTG CACAAGAACT GGGATACGTG AAAAATGCCA CCGCTTCCTC TTTGAGGAGC
AAGCAAACGA ACATCGTGGG GGTCATCATA GCCGACAGTG CCAACCCGTT CTACGCGGAG
GTCTTGAAGG GAATAGAAGC CGCTTCGAGA AAGTACGGCT ATCAGATCAT GCTCATGAAC
ACTGAGAGAA TCTACGAAAA TGAAGAGAAG GCTATAGAAG TGCTTCTCCA GAGGAGAGTC
GATGGTCTTC TCATAACACC TGTTCAGGAT AAATCAGACG ATATAAGAGC TTTGATCGAA
AGAAAAGTTC CCTTCGTCAT AGTCGGCAGA CACTTCGAAG AGTTAGAAGT GGATGAGATC
CACAGTGATG AGGTAAAGGG AGGGTATCTT GCAACCAGAC ATCTCATAGA AAGAGGAAGA
AAAAACATCA TTATGATCAG CGGATATCTG TTCAAATCGG CTGCCTACAT GCGACTTGAA
GGATACAGAA AGGCTTTGAA AGAGTACGGA ATTCCATTCA GTGAAAAAAT GATCATTGAA
ACAGACATTG ACATAGAGAG TGGATATCGA GCGATGCGGG AAGCGATTGA AAAGGGACTT
GAATTCGATG CGGTCTTCTG TTACAACGAT CTACTCGCTT TTGGTGTGAT AAAAGCCTTG
AAAGAGTGTG GATATCGTAT ACCAGAAGAT GTGGCTGTTG TTGGCTACGA CGACATCGTT
TATTCCTCTT TTGTTTGCCC CTCTCTGACA ACGGTGAGGA TAAAGAAGTT CGAAATGGGA
TATGAGGCGT TCAGGATGCT TCTTCAAAGA TTGAAGGGGC GAAGAAAGAA AAGAAAACGA
GTAATCTTGG ATGTGGAGCT CGTTGTGAGG GAAAGTGGAT GA
|
|---|
| Protein sequence | MKKKYVTIRD IAEKAGVSIN TVSRALNNKP DISEETRRKI LKIAQELGYV KNATASSLRS
KQTNIVGVII ADSANPFYAE VLKGIEAASR KYGYQIMLMN TERIYENEEK AIEVLLQRRV
DGLLITPVQD KSDDIRALIE RKVPFVIVGR HFEELEVDEI HSDEVKGGYL ATRHLIERGR
KNIIMISGYL FKSAAYMRLE GYRKALKEYG IPFSEKMIIE TDIDIESGYR AMREAIEKGL
EFDAVFCYND LLAFGVIKAL KECGYRIPED VAVVGYDDIV YSSFVCPSLT TVRIKKFEMG
YEAFRMLLQR LKGRRKKRKR VILDVELVVR ESG
|
|---|
| |