| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1555 |
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| Symbol | |
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| ID | 5170303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 1548790 |
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| End bp | 1550628 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640564081 |
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| Product | arabinogalactan endo-1,4-beta-galactosidase |
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| Protein accession | YP_001245138 |
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| Protein GI | 148270678 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3867] Arabinogalactan endo-1,4-beta-galactosidase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.428291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGAGG TTGGTTTGAT GAGAGGGGTG CTTTTCGTGC TGATGATTTC TTCCATGGCC
TTTGGTTTGA TAGTCAACCC GGTGAAAAAC CTGTGCGAGG ATTTCATCTT TGGAATGGAT
GTTTCTATGC TCTACGAGAT CGAGCAACTG GGTGGGAAAT ATTTCGAGAA TGGTGTGGAA
AAAGATTGTC TTGAAATACT GAAGAATCAT GGAATAAACT GGATCAGGTT GAGGGTGTGG
AATGATCCGA GAGACGAGAA TGGAAATCCT CTCGGAGGAG GAAACTGCGA TTACCTGAAG
ATGACAGAAA TCGCTAAAAG GGCAAAGAAA CTCGGAATGA AAGTGCTTCT TGACTTCCAT
TACAGCGACT GGTGGGCGGA TCCTGGAAAG CAGAACAAAC CAAAAGAGTG GGAATATCTT
CATGGAGAAC TTCTGGAGAG GGCGGTTTAC TCCTACACGA AACTTGTACT GAACCACATG
CGAAGAAACG GGGCACTACC AGATATGGTC CAGGTGGGGA ATGAGGTGAA CAACGGTTTT
CTCTGGCCTG ACGGCAAGAT TTCTGGAGAA GGTGCAGGTG GTTTCGACGG ATTCACAAGA
CTTTTGAAAG CTGCCATCAA GGCCGTTAGA GAGGTTGATC CGGATATAAA GATCGTTATT
CATCTGGCGG AAGGTGGAAA CAACTCTCTC TTCAGATGGT TCTTCGACGA GATCACAAGA
AGAAACGTGG ACTTCGATGT AATAGGTGTA TCTTACTACC CGTACTGGCA CGGAACCCTC
GAGGATCTGA AAAACAACCT CTACGACATA GCCACAAGAT ATAACAAGGA TGTGCTCGTT
GTTGAAACAG CTTACGCCTG GACACTCGAG GATGGAGATG GTTATCCCAA CATCTTCAAT
GGTGAAGAAA TGGAACTAAC AGGTGGCTAC AAGGCAACCG TTCAGGGACA GGCAACATTT
CTGAGAGATC TCATGGAAGT GGTAAACAGC GTTCCCAACG GCCATGGACT CGGGATTTTC
TACTGGGAAG GAGATTGGAT CCCTGTGAGG GGGGCTGGAT GGAAAACCGG AGAAGGAAAC
CCCTGGGACA ACCAAGCTAT GTTCGATTTC AGTGGGAACG CTCTCCCATC ACTGAATGTT
TTCAAACTGG TGAAAACATC ATCGCCAGTG GAGATTGCGA TAAAAGAGAT CCTTCCTGTG
GAGGTTACAA CCAACCTGGG AGAGGTTCCA AAATTTCCAG ATGCTGTGAA AGTTCTGTTC
AGCGACGATT CCATCAGATC TTTACCTGTC GAATGGAACT TTGATTCTGC CCTTGTTGAA
GAATCCGGTG TTTACAAAGT GGAAGGCTAC ATTAAAGACA TTGACCGGAA AATTTTCGCG
ACACTCACCG TGAAGGGTAG CAGAAACTAT CTGAAAAATC CGGGCTTCGA AACAGGAGAA
TTTTCGCCTT GGCAGGTCTC GGGAGACAAA AAAGCGGTGA AAGTTGTAAA AGTCAATCCT
TCAAGCAATG CGCACCAGGG AGAGTACGCA GTGAATTTCT GGCTCGATGA ATCCTTCAGT
TTCGAACTGT CACAAGAAGT GGAACTTCCA GCAGGTGTGT ACAGAGTAGG GTTCTGGACC
CATGGAGAAA AAGGTGTGAA GATTGCTCTG AAGGTAAGTG ATTACGGAGG AGATGAACGA
TCTGTAGAAG TTGAAACAAC GGGCTGGCTC GAATGGAAGA ACCCGGAGAT AAGGAACATA
AAAGTTGAAA CAGGAAGAAT AAAGATTACC GTTTCTGTCG AGGGAAGGGC AGGTGACTGG
GGGTTCATTG ATGATTTCTA TCTTTTCAGA GAAGAGTAA
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| Protein sequence | MKEVGLMRGV LFVLMISSMA FGLIVNPVKN LCEDFIFGMD VSMLYEIEQL GGKYFENGVE
KDCLEILKNH GINWIRLRVW NDPRDENGNP LGGGNCDYLK MTEIAKRAKK LGMKVLLDFH
YSDWWADPGK QNKPKEWEYL HGELLERAVY SYTKLVLNHM RRNGALPDMV QVGNEVNNGF
LWPDGKISGE GAGGFDGFTR LLKAAIKAVR EVDPDIKIVI HLAEGGNNSL FRWFFDEITR
RNVDFDVIGV SYYPYWHGTL EDLKNNLYDI ATRYNKDVLV VETAYAWTLE DGDGYPNIFN
GEEMELTGGY KATVQGQATF LRDLMEVVNS VPNGHGLGIF YWEGDWIPVR GAGWKTGEGN
PWDNQAMFDF SGNALPSLNV FKLVKTSSPV EIAIKEILPV EVTTNLGEVP KFPDAVKVLF
SDDSIRSLPV EWNFDSALVE ESGVYKVEGY IKDIDRKIFA TLTVKGSRNY LKNPGFETGE
FSPWQVSGDK KAVKVVKVNP SSNAHQGEYA VNFWLDESFS FELSQEVELP AGVYRVGFWT
HGEKGVKIAL KVSDYGGDER SVEVETTGWL EWKNPEIRNI KVETGRIKIT VSVEGRAGDW
GFIDDFYLFR EE
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