| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1553 |
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| Symbol | |
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| ID | 5170167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 1544589 |
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| End bp | 1546322 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640564079 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_001245136 |
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| Protein GI | 148270676 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00117262 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAAACA TCGTTAAATT GTTTCTCTGG TTTCTTCTTG CCATTTTGAA CATCGCTCTC
TTCTGGGCAG GTGTTTTTCT TTTCCAGAAC GAGTATTACG AACTTTCGAT AGTGCTTTTC
TCTCTGTTAG TTCTAATAGA TTTCTTCATC ATCAACCCAA AGGGATATCC TTACAGATAC
ACCATACCTG CTCTTGTTCT GCTTTTTGTT CTTGTACTCT ATCCGATATA CTTCACCTTC
AAAGTGGCAT TCACCAATTA TGGAACGGGC CACTTCATGT CGAGACAGGA AGCTATAGAG
AGACTTCTCT ATGACCCAAA TTTTTCCTAT GTGGTAGATT CGACTCCTGT TTCATATAAG
GTGTTCGTGG TGTACGACGG CCTCTCTCCC ACTGATGACT TCCTAATACT TTTCAAAACG
GGAGATACCA TTTTCCTTGG TGAAAGACCG AAACCAGTTG TCGCACGAGG TCAGGAGGTT
CTCCTGAGTC AGTTCAATCT GGTTCCGATC ACGGGTGAAA CGATCTCACT GAACAGCGAC
ACCTTCAGGA TTGTTCCATG GCCTGCGGAT CTCTCGGAGA TCAATCTTGT AGTACGTGGT
GAGAAGACCT ACAAGAGCTT CTACTCACCC GATGACGAGA TTCTGAGGTT GAATGCACCT
TACTTCAAGA GCAGAATAGC TCAGGGTTAT CTGGTGAACG CAGAATACGT GCTTCCCGAT
GGAAAAAAAT TGGCCCTGAG AATTGCTCCG GATGGAGAAT GGAGATTCAT GTACGTGGAG
AGGCTCTACA GACTGGCTTA CAAAGAAATA TACGACGGTG TGAAAATGAA GATAAAAACC
ACAGTAGTGA ACAATCTCAC GGGAAGAGAA GTGGTAGAAC GTGAAGGTGC TTTCTACGAT
GTGGACGAAA ATGGGAACGA GACGTTCCTT GTTGGATTCA TAGATTTTGT GGGATGGAAA
AACTTCCTGA GGATCGTTAA AGATCCAAAG GTTTCCGGTC CTTTCTTCAG AATATTTCTC
TGGACTTTCG TGTGGGCTGT TCTCAGCGTG GTCCTTTCCC TCGCTGTGGG ACTTCCGTTT
GCGCTTGTTT TGAACAACCC AAGACTCAAG GGAAGAAACC TCTACAGGAC GCTTCTGATC
ATTCCCTGGG CCATTCCAGT TTTCATTTCG GCTCTGGTCT GGCGCAATGG ACTTCTGAAC
GAGTCTTACG GTGTGATCAA CAAGTTCCTT TTACCTCTTT TTGGCCTCGA ACCAATAAAA
TGGTTCAACG ATCCCTTCTG GGCACGTGTG GGAGTCCTTC TCGTCAACGT CTGGCTCACG
TTTCCGTACA TGATGACGAT CTCACTCGGT GCCCTTCAGA GCATTCCACC AGAGCTCTAC
GAGGTAGCGG CAATAGACGG TGCAGGAAGA TTCAGGAGAT TCGTACACAT CACCTTCCCA
CTCCTTATGA CCATCATTGC ACCACTCCTC GTGAGCAGTT TCGCCTTCAG TTTCAACAAC
TTCACAATCA TATACCTGAT CACGGGTGGT GGGCCTCCAA TTCCTAACTC GACCACTCCA
ACAGGATACA CAGATATTTT GATCTCTTAC GTCTACAAAC TGGCGTTTGA AGGTGGTCAG
GGACAGGACT TCGGTTTTGC CAGTGCCATT TCAATACTCA TCTTCTTCCT AGTCGGAGGA
ATCAGCTTCG TAAACTTCAA GCTGTCTGGT GCATTCGAAG AGGTGAGCAG ATAA
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| Protein sequence | MKNIVKLFLW FLLAILNIAL FWAGVFLFQN EYYELSIVLF SLLVLIDFFI INPKGYPYRY
TIPALVLLFV LVLYPIYFTF KVAFTNYGTG HFMSRQEAIE RLLYDPNFSY VVDSTPVSYK
VFVVYDGLSP TDDFLILFKT GDTIFLGERP KPVVARGQEV LLSQFNLVPI TGETISLNSD
TFRIVPWPAD LSEINLVVRG EKTYKSFYSP DDEILRLNAP YFKSRIAQGY LVNAEYVLPD
GKKLALRIAP DGEWRFMYVE RLYRLAYKEI YDGVKMKIKT TVVNNLTGRE VVEREGAFYD
VDENGNETFL VGFIDFVGWK NFLRIVKDPK VSGPFFRIFL WTFVWAVLSV VLSLAVGLPF
ALVLNNPRLK GRNLYRTLLI IPWAIPVFIS ALVWRNGLLN ESYGVINKFL LPLFGLEPIK
WFNDPFWARV GVLLVNVWLT FPYMMTISLG ALQSIPPELY EVAAIDGAGR FRRFVHITFP
LLMTIIAPLL VSSFAFSFNN FTIIYLITGG GPPIPNSTTP TGYTDILISY VYKLAFEGGQ
GQDFGFASAI SILIFFLVGG ISFVNFKLSG AFEEVSR
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