Gene Tpet_1548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1548 
Symbol 
ID5170548 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand+ 
Start bp1539971 
End bp1540951 
Gene Length981 bp 
Protein Length326 aa 
Translation table11 
GC content46% 
IMG OID640564075 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001245132 
Protein GI148270672 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.135597 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGATAGGCG TGGCTGAAGT GGTACTGGAT GTCAGAGATC TGAGAATTTA TTACAGAACC 
CTCTACGGCT ACGTGAAGGC CGTTGATGGG GTGAGTTTCG ATATAAAAAG AGGTGAAATC 
CTTGGAATTG CGGGTGAATC TGGCTGTGGA AAGTCCACTC TTGGAAACGG CTTGATCCTT 
TTGAAACCTC CCATGAAGTA CATGGGAGGA GAAGCGATCC TCGATGGAAA GAACATCATG 
GCACTATCTC CAAAAGAGCT CAGGAAAGTG AGGTACGAAA AGATCTCCAT CATACCACAG 
TATGCCATGG ACGCTATGAA CCCGACGAAA AAGATAAAAC AGATCATAGA CGACCTTCTG 
CACGAACACG GAGAAAGTTT TGAAAGAAAA AAAGATGTTA TCGAGGAAAG GCTCGAGATC 
GTCAACCTTG GAAAGAAAGT TCTAAACATG TATCCGATCG AACTCTCTGG AGGAATGAAG 
CAGAGAATGG TGATGGTGAT CTCTACATTG ATGAATCCCG ATGTCCTCAT AGCCGATGAG 
ATCACATCAG CCCTGGATGT GAGTTCTCAA AGATCGGTTA TACAGATGCT TTATGAGATG 
AGAGAAAAGG AAATCATGGG ATCACTCGCG TTCATAACAC ACGATCTCTC GGTCCTTTAT 
CAGATCGCAG ACAAGGTGAT GGTGCTCTAC GCGGGAAGAG TGGCGGAAAT CTCTCCAATG 
GAAGACATCA TCCAAGAACC CCTTCACCCT TACACCAAGA TGCTTCTTTC TTCACTTCCG 
AAGATAGGTG TCAGATATTC CCAGACGAAG CTCAAGGGAA TCCCGGGATA TCCACCCAGT 
CTTCTCAACA TAGGACCGGG ATGTAGATTC AGAGACAGGT GTCCTTACGC GTTCGAGAAG 
TGTGAACAGG ATCCACCAGT GTTCGACGTT GATGGGAGAA AGGTCTCATG CTGGCTTTTC 
GAAAGAGGTG ATGCAAATTG A
 
Protein sequence
MIGVAEVVLD VRDLRIYYRT LYGYVKAVDG VSFDIKRGEI LGIAGESGCG KSTLGNGLIL 
LKPPMKYMGG EAILDGKNIM ALSPKELRKV RYEKISIIPQ YAMDAMNPTK KIKQIIDDLL 
HEHGESFERK KDVIEERLEI VNLGKKVLNM YPIELSGGMK QRMVMVISTL MNPDVLIADE 
ITSALDVSSQ RSVIQMLYEM REKEIMGSLA FITHDLSVLY QIADKVMVLY AGRVAEISPM 
EDIIQEPLHP YTKMLLSSLP KIGVRYSQTK LKGIPGYPPS LLNIGPGCRF RDRCPYAFEK 
CEQDPPVFDV DGRKVSCWLF ERGDAN