| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1546 |
|---|
| Symbol | |
|---|
| ID | 5170208 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1538131 |
|---|
| End bp | 1539120 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640564073 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001245130 |
|---|
| Protein GI | 148270670 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.201303 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGAAAGT ATCTTACAAA GAAGATCCTG ATCTACATTC TGACCTTCTT TTTTGCCGTC
ACAATTGACT GGGCTATTCC TCGATTTATG CCAGGAAACC CTATAAATTT TCTGATCTCA
AGGTTCGCCG GACTTCCAGA ATCTGTCAAG GTTCTTCAAA GCTACTTCAC TCAGGCTTTT
GGTCTCGACA AACCCCTCTG GGAGCAGTAC ATCAATTTCT GGAAAGCGCT TTTCAGAGGT
GACCTTGGTA TAAGCATCTA CATGTATCCT CAACCAGTTG CAAAAGTGAT AGCTCGTGCC
TTGCCTTACT CGCTGATAGT GCTTCTTCCA GCCGTTCTTC TGAGTTTTGC GATAGGAAAC
AGATTTGGAG CTTTCGTTGC AAGGAAAAAG AGACTCGATA ACTTTGCACT GCCTGTTTTT
TACACTCTGA CAGCATCTCC CTACTTCTGG TTTGGTATTC TTCTTGCCTG GATATTCGGT
GTGGTTATAC CTCTGTTTCC CCTCGCAGGT GCTTACAGCT TTGGAATAAC ACCTTCATTC
TCCTGGGATT TCATACTCGA TTTTCTGCAC CACTGGGTAC TTCCATTTGG TTCTCTGTTT
CTTGTGATGC TCGGGGGCTG GGCAATAGGT ATGAGGAACA TGATCATCTA CGAACTGGAA
GCGAACTATT CCAGATATCT CGAGGCGCTC GGATCGTCTC AGAGACTCAT AAGGAAATAC
GCTTACAGAA ACGCCATCCT CCCGCAGATC ACCGGTCTTG CCATCCAGCT CGGAACGGTG
GTTGCAGGTG CTCTCACAAC GGAAATCGTC TTCTCCTACC CCGGTATAGG ATACATCCTC
ATGCAGGGAA TTTTGAACCA GGATTATTTC CTGATTCAGG GGTGCTTTTT GTTCATCATC
CTTGGAGTGC TTCTTGCCAA TTTCCTCGTT GATATCTTCT ACGTTATCAT AGATCCCAGA
ATCAGAAAAT CCTATTCGGG AGAGGTTTGA
|
|---|
| Protein sequence | MRKYLTKKIL IYILTFFFAV TIDWAIPRFM PGNPINFLIS RFAGLPESVK VLQSYFTQAF
GLDKPLWEQY INFWKALFRG DLGISIYMYP QPVAKVIARA LPYSLIVLLP AVLLSFAIGN
RFGAFVARKK RLDNFALPVF YTLTASPYFW FGILLAWIFG VVIPLFPLAG AYSFGITPSF
SWDFILDFLH HWVLPFGSLF LVMLGGWAIG MRNMIIYELE ANYSRYLEAL GSSQRLIRKY
AYRNAILPQI TGLAIQLGTV VAGALTTEIV FSYPGIGYIL MQGILNQDYF LIQGCFLFII
LGVLLANFLV DIFYVIIDPR IRKSYSGEV
|
|---|
| |