Gene Tpet_1540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1540 
Symbol 
ID5171376 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp1530080 
End bp1531222 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content48% 
IMG OID640564067 
Productglycosyl transferase family protein 
Protein accessionYP_001245124 
Protein GI148270664 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0463] Glycosyltransferases involved in cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0303814 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTGG TTGTGGGGAT ACCGAGTTAC AACAACGCCG AAACGATTTC TCACGTTGCG 
AGAACAGCGG CGCAGGGAAT TGTAGATTTC TTCGATGGTG ATGGTATGAT CGTGAACTCC
GATGGAGGAT CGGCAGATGG GACAAGAGAG CGCTTCATGG AGACCGATAC TTTCGGTCTT
CCCAAAGAGA GCTTCGTTTA TGAAGGCCTT CCCGGAAAGG GAAGCGCGAT GAGAGCGATC
ATGGAGTTTG CTATGAAACA GGGTGCGGAA GCGGTTGTTT TTCTCGACTC TGATCTTCGA
AGTGTCAAAC CCTGGTGGAT CGAAAGACTC GCAGGACCTA TTTTGAAAGG AGAGGCAGAT
TACGTCACTC CCTTCTATCT GAGGCACAGG TTTGACGGTA CGATCACGAA CAACGTGTGT
TTTCCAATAA CGGCTGTTCT CTACGGTAAG AAGGTGCGAC AACCCATCGG TGGGGATTTC
GGTGTGGGAA GAAAGCTCCT CGAGATTTAT CTGGAAAAAC CAAAAGAGAT CTGGAACACG
GACGTTGCAA GATTCGGGAT CGACATATGG ATGACCACAA CCGCTATAAA CGAGTCTGGA
AGGGTGGTTC AGGCAGCTCT CGGAGCGAAG GTGCACGACG TGAAAGACCC GGGAAAACAT
CTGAAGGGAA TGTTCCTTCA GGTCGTGGGA ACGCTCTTCG AACTTGTGAT CACCTACGAA
AACGCCTGGA AAGAAGTATG GAAGATAGAA GACGTTCCCA TCTATGGTGA AACTCCTCAA
GAGGAAGTTC CTCCTATGAG TATAGATATC GAAAACCTCA AAAAACTCGC AAGAGAAACT
CTGGAAGAAG TGGAGTACAT AGACCGCAGC ATCCTGTCGG AAGTGAAAGA AAACGGTACA
CTGAGTCTCT CTTCCTGGAT TGACACCCTC TACAGGAGCG CTGTTCAGTA CAGGAAAACA
AGGGATAAAA GAGTGGTGGA GAATCTTCTG CCGTTCTACT TCGCAAGAAC CGTACGGTTC
GCGGAAGAGG TAAAATCTCT ATCGGATGAA GAAGCAGAAA AATACGTGTA CGAACAGCTC
GATGTGTTTC TGGAGAAGAA ACGCTTGTTC AAGGAGGAAT GGGAAGTTGA AAATAAAAGA
TAA
 
Protein sequence
MKVVVGIPSY NNAETISHVA RTAAQGIVDF FDGDGMIVNS DGGSADGTRE RFMETDTFGL 
PKESFVYEGL PGKGSAMRAI MEFAMKQGAE AVVFLDSDLR SVKPWWIERL AGPILKGEAD
YVTPFYLRHR FDGTITNNVC FPITAVLYGK KVRQPIGGDF GVGRKLLEIY LEKPKEIWNT
DVARFGIDIW MTTTAINESG RVVQAALGAK VHDVKDPGKH LKGMFLQVVG TLFELVITYE
NAWKEVWKIE DVPIYGETPQ EEVPPMSIDI ENLKKLARET LEEVEYIDRS ILSEVKENGT
LSLSSWIDTL YRSAVQYRKT RDKRVVENLL PFYFARTVRF AEEVKSLSDE EAEKYVYEQL
DVFLEKKRLF KEEWEVENKR