| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1488 |
|---|
| Symbol | |
|---|
| ID | 5171641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 1473630 |
|---|
| End bp | 1473977 |
|---|
| Gene Length | 348 bp |
|---|
| Protein Length | 115 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640564014 |
|---|
| Product | cupin 2 domain-containing protein |
|---|
| Protein accession | YP_001245072 |
|---|
| Protein GI | 148270612 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0662] Mannose-6-phosphate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00804045 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGTGA AATCTTCTGA ACTCACCCCT GAAAAGATAT CGAACATGCG CGGCGGAAAG
GGTGAGGTGG AGATGACACA CCTTCTTTCC AAAGAAACCA TGAGGAACAG GGCAAGACTC
TTCGCAAAAA TGAAACTTCC ACCGGGGTCT TCTGTGAGAC TGCACAGGCA CGATGGAGAG
TTCGAGATAT ACTACATCCT CTCCGGAGAA GGCATCTTCC ACGACAACGG AAAGGACGTT
CCCATAAAGG CAGGAGACGT GTGTTTCACA GATTCTGGAG AGTCACATTC CATAGAGAAC
ACAGGAGAGA AAGACCTTGA GTTTCTGGCG ATAATCGTTT TGCTCTGA
|
|---|
| Protein sequence | MVVKSSELTP EKISNMRGGK GEVEMTHLLS KETMRNRARL FAKMKLPPGS SVRLHRHDGE
FEIYYILSGE GIFHDNGKDV PIKAGDVCFT DSGESHSIEN TGEKDLEFLA IIVLL
|
|---|
| |