Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1486 |
Symbol | |
ID | 5171561 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | - |
Start bp | 1470870 |
End bp | 1472954 |
Gene Length | 2085 bp |
Protein Length | 694 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640564012 |
Product | RND efflux transporter |
Protein accession | YP_001245070 |
Protein GI | 148270610 |
COG category | [R] General function prediction only |
COG ID | [COG1033] Predicted exporters of the RND superfamily |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0030427 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGTTCGAAG AGTACACCTC TTTTGTTTTC AAAAACAGAA AGAAGATCTT CGCGGTGGTG CTGGTACTGA ACATTTTAGC ACTCTTTGGG CTTTTCAGAC TTCACTTCAC AACTGAGTTT TCCATTCTGA TGCCTCAGAA ATCCCGTCAG AAAGAGATAT ACGAGAAGAT GAACGGCGTC TTCAAAACAG GAGAACAGCT TGTGGTGATG GTGAAGACGA ACGTCGATCC CCTGAGCAGA GAGGGAATAG ATGAGATCTT TGAAATAAAG GAAAAACTCT CCTCCGTTGA AGGTGTAAAG ACTGTCATAC CACCCATTCC GGAGAAGTTT CCCGCTGGCT TCAGACTGGT GGAGACAAAG AACATGTCCG AAGAGCAGTA CAGAGACTTT CTGAGCTATG TTGAAAACAT GAAAGACTTC CTCAACGTGA GGAAAATGGA AGATGGATAC TACTCCCTAT TCATGATACT TCCCAGAAAC AGTGTAAATC CCAATGAAAT CGAAAGTACT CTTTCAGGAT ATGAACATTA CCTCTCTGGA ACACAGTATC TGGAAGACCA GATATTTCGC TATCTTCTGT TCATGATATT CACACTTCCC CCACTCGCCG TTGTTCTTCT TCTGAACGTC TTCAGAGTAC AACTTGGAAG GTTCAGATAC GCCATTTTAT CTTTGATACC GGCGGGATTC GCCGCCCTCT GGACGCTTGG CTACGTGATG GGATGGATGG GCCAGAACCT TTCCATCATC ACGGTTCTGG TTCCCATATT CACCATCGTC ATGGGAAGTG CCGATGGGCT TCACTTCGTT TCGCACTTTT TGGAACGAAA GAAAGATGGA GAGAGTACGT TCAACGCCAT CAAAGATACT CTCGAGAGTG TTGGAAGGGC GATGATCCTC ACCACACTCA CCACGATGGC AGGATTTCTC TCTTTTCTCA CTTTGAACTC TCAGTCCATG AAACAGATGG GACTCCTCGC TGCTGCTGGA ATCGGTCTTG CGGGAGTTTC AACGTGGATC GTACTTCCCG TAATACTGTC AGGAATGGAA GATGTTGAGA TCAAAAAGAA GGAAAGCAGC CTGGCCCGGC TTTTTCAAAG ACTTTCAAAG CGAGCGTGGA TCATCACACT GGTGGTTCTT TTCGCCTTCC TTCCAGGCAC ATTCCTTCTG AAGGCAGACC TCAACATTCT GAAACTCTAC AAAGGCTACA CAAGGGTCAG AAAGAACGTG GAGAAGATAG AAGAGATCTT CGGAAGGGCT CTGCCTGTTT ATGCCGTTTT CGAGTCAGAG AATCTGCTCT CTCCAGACTT TGCCCGGAAG GTCCTTTCTA TGGAGGAAAA ACTGAAGAGC AAAGGATACG ATGCCTTTTC CGTCTACGAC ATCCTTGTGA GGATGAACGA ACATCTCTTC AAAGAAGAAG GTTACCCGAA AATCCTTGCA AGGGCGCTGA TACTCAAAAG ACTTCTTCCA GAGGATTACA CGAGCAACTT TCTATCCGAA AGCACAGGAA GAGCTTTTAT CTTTCTGGAT AACCTGGACA GAAACACTCT CGAGGAAGTG GAACACATAG TGAAAGAAAG CGGCTTTCAG GTGACAGGGC TTCCCTACAT CATAAAAGAG ATGAACGACT CGATCGTTCC TCAGCAGGTA CTTTCGGTGG TGCTTGCTGT CAGTATGGTC TTTCTCCTTC TTGTTCTGTT TCAGAGAAGT TTTGTCATTC CGGCAAAGGC GATCGTTCCT GTTTTGATCT CGCTTGTGTC TCTTTTTGGC TTCATGGGGC TTTCTGGAAT TCCTCTGAAC CTGATCACGG CAAACATGGC CGGAATAGTG ATCGGGGTTG GTATAGACTA CGCCATACAT GTGACGGAGC TGTTCAGATA TTACAGAGAT CTGGAAAAGA CGGTAAAGAT CGCATCCACA CCAATTCTGG CAAACGCCTT TGGTCTTTCT GTGGGGCTTT CCGCTCTGAT TCTGTCTCCC TTCACGTTCC ACACTTATCT TGTCGCAATC ATGTGGGTCA CAATGACCGT GAGTTCTTTC ATGAGTCTTG TGGTCTTGCC GAAACTTCTG GAGGTGAAAA GATGA
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Protein sequence | MFEEYTSFVF KNRKKIFAVV LVLNILALFG LFRLHFTTEF SILMPQKSRQ KEIYEKMNGV FKTGEQLVVM VKTNVDPLSR EGIDEIFEIK EKLSSVEGVK TVIPPIPEKF PAGFRLVETK NMSEEQYRDF LSYVENMKDF LNVRKMEDGY YSLFMILPRN SVNPNEIEST LSGYEHYLSG TQYLEDQIFR YLLFMIFTLP PLAVVLLLNV FRVQLGRFRY AILSLIPAGF AALWTLGYVM GWMGQNLSII TVLVPIFTIV MGSADGLHFV SHFLERKKDG ESTFNAIKDT LESVGRAMIL TTLTTMAGFL SFLTLNSQSM KQMGLLAAAG IGLAGVSTWI VLPVILSGME DVEIKKKESS LARLFQRLSK RAWIITLVVL FAFLPGTFLL KADLNILKLY KGYTRVRKNV EKIEEIFGRA LPVYAVFESE NLLSPDFARK VLSMEEKLKS KGYDAFSVYD ILVRMNEHLF KEEGYPKILA RALILKRLLP EDYTSNFLSE STGRAFIFLD NLDRNTLEEV EHIVKESGFQ VTGLPYIIKE MNDSIVPQQV LSVVLAVSMV FLLLVLFQRS FVIPAKAIVP VLISLVSLFG FMGLSGIPLN LITANMAGIV IGVGIDYAIH VTELFRYYRD LEKTVKIAST PILANAFGLS VGLSALILSP FTFHTYLVAI MWVTMTVSSF MSLVVLPKLL EVKR
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