Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1484 |
Symbol | |
ID | 5171188 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | + |
Start bp | 1469308 |
End bp | 1469973 |
Gene Length | 666 bp |
Protein Length | 221 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640564010 |
Product | ribonuclease H |
Protein accession | YP_001245068 |
Protein GI | 148270608 |
COG category | [R] General function prediction only |
COG ID | [COG3341] Predicted double-stranded RNA/RNA-DNA hybrid binding protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0000443868 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTGG CAAAAAAATA CTACGCTGTG AGGAAAGGAA GGGTACCAGG AATCTATGAG TCCTGGGAAG AGGCAGAAAA ACAGGTAAAG GGCTTTCCGG GAGCAGAGTA CAAAAGTTTT GAGAAGATAG AGGATGCAAA GGCATATCTT GAGGGAAAAG ATGAATGCAC CTGCCCGGAA CTTGACGAAG AGACGATGAT CGCCTATGTG GATGGGAGTT ATGATGTGGT CTGTGGTTCT GGAGTGGTTC TGTGCTATAG GGGAAAGAAA GAGGAGTACT ATTTCTGGAC GGACATCGAT GAGTTCAAAG ACTCAAGGAA CATAGCCGGA GAGATCATGG CTGCACTTTT TGCCATGGAC TGTGCTTTGA AGAAAGGAGC AAAAAGACTC ATTCTCAGGC ACGATCTTGA AGGGCTTGAA AAGTGGGCAA CGGAAGAGTA CAGAACAAAA GAGCCGGTGA CGCGTGTTTA CAAGTACCTT TACGAGCAGT TTTGCAGGAG CGGTCTTGAA GTGGTCTTTG AGAAGGTGAA GAGTCACTCT GGAGACTTTT GCAACGATGA GGCTGACAGG CTGGCAAAAG AAGCAGCGAA AAAAAGATCA AACGTTGAGT GGACTTTGAG GGATTTCGAG AGTACAATGA AGATACTGGA TCAAAAGAGG AGATGA
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Protein sequence | MKLAKKYYAV RKGRVPGIYE SWEEAEKQVK GFPGAEYKSF EKIEDAKAYL EGKDECTCPE LDEETMIAYV DGSYDVVCGS GVVLCYRGKK EEYYFWTDID EFKDSRNIAG EIMAALFAMD CALKKGAKRL ILRHDLEGLE KWATEEYRTK EPVTRVYKYL YEQFCRSGLE VVFEKVKSHS GDFCNDEADR LAKEAAKKRS NVEWTLRDFE STMKILDQKR R
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