| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1438 |
|---|
| Symbol | |
|---|
| ID | 5170628 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 1427224 |
|---|
| End bp | 1429350 |
|---|
| Gene Length | 2127 bp |
|---|
| Protein Length | 708 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640563967 |
|---|
| Product | polynucleotide phosphorylase/polyadenylase |
|---|
| Protein accession | YP_001245027 |
|---|
| Protein GI | 148270567 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
|---|
| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000113293 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGAAT GGCGACGTAA CATCCTTGGA AGAGAACTCG TAGTTCAGTA CGGAAAAGTA
GCGAAACAAT CGAGTGGTTC AGCCCTGGTG AGGTTTGGTG ACACAGTTGT TCTGGCAACC
GCAAACATTT CAGACAAAGC AGTGGAAGGA ATCGACTTTG TACCTCTCAC CGTTGAGTTC
CAGGAAAGGT TCTACGCTGC CGGAAAGATC CCCGGTGGTT TCATAAAGAG GGAAGGTAAA
CCCAGCGAAT CCGCTATTCT CTCAGCCCGC CTCATCGACA GACCGATAAG GCCTCTCTTT
CCAAAAAAAC TCAGAAACGA GGTCCAGGTT ATCGTGACCG TGCTTTCGGT GGATCCGAAC
GTTCCACCGG ACGTTGTGGG AATCTTTGCC GCGTCCCTCG CATTGAACGT TTCAAAGATA
CCGTTTGAAG GTATAGTGGC GGGTATCAGG GTTGGTTACA GAGACGGACA GTTCATAGCC
TTACCCAGTG AGGAAGACAT AGAAAAGGGC CTGATGGATA TCACCGTTGC TGGAACAAAA
GACGCTGTCA CCATGGTCGA AGGTGAGGCG AAAGAAGTAG CAGAAGAAGA TATGGTGAAG
GCCCTGAGAT TCGCGCATTC CGTTATAAAA GAACTCGTCG ATTTCCAGGA AGAGATTCTC
TCAGAGTTCA ACGTGGAGAA AATCCCCGTT GTCGAGCCCA CACCACCTGA AGGCCTCGTT
GAGGCTTTCA AAGATCTTCT AAACAAAGAA GAACTGGAAA GAAGAATCCT CGTAAAGGTG
AAGAAGGAAA GAGAAGTGGC TCTCAAAGAG TACGAAGAAC AGCTTCTGAA TCAGATTGCA
GAAAAATTGT CCGTAACCGA TTTGGAAGGA ATCAAACCCT TTGTCTCGGA ACTCTATGAA
GATGCCGTCA AAAAAACAAT GAGGAGATTG ATAGTGGAGA AGGGTATCAG AGCGGACGGG
AGAAAACCGA CCGAGATCAG ACCCATCTCC TGCGAGGTTG GATTGTTCCC GAGAACACAT
GGCTCTGCTC TTTTCACCAG AGGGGAAACA CAGAGTCTCG GCATCGTTAC TCTCGGCGCT
CCCATGGACG TTCAGATCAT AGACACACTC CTCGAAGAAG GCGTTAAGAG GTTCATGCTG
CACTACAACT TTCCTCCGTT CTGTACAGGA GAGGTGAAGC CGCTCAGAGG TCCCAGCAGA
AGGGAAATCG GGCATGGACA TCTGGCAGAA AGAGCTCTGA AGAACATGCT TCCACCCGAA
GAAGAGTTCC CCTACACCAT AAGAGTGGTT TCTGAGATCC TGGAGTCCAA CGGTTCTTCC
TCAATGGCCA CGGTGTGTTC AGGATCCCTG GCGCTGATGG ATGCTGGAGT TCCTATCAAG
AAACACGTTG CAGGAATAGC GATGGGGCTC ATTCTTGAAG AAGACGCCGA GATCATACTC
ACAGACATCA TTGGAATGGA AGACCACTAC GGTGATATGG ACTTCAAAGT GGCTGGAACA
AGAGATGGAA TCACCGCCTT TCAGATGGAC TGTAAGGTCT CAGGTGTCTC AGATGAACTC
CTCATGAAAG CGCTCATGCA GGCAAGGGAA GCGAGAATGT ACATTCTCGA CAGGATGTAT
GAAACCATCT CTGCTCCAAG ACCGCATCTG TCCAAGTATG CACCGATCAT AAAGGTAACC
AAGGTCGATC CAGAAAAAGT GGCGGATGTC ATAGGACCTG GAGGCAGAGT GATAAAGAAG
ATCATAAAAG ACTTCGATGT GAAGGTGGAG ATCGACGACG AAACAGGCCT CGTCAAGGTC
GTTGGAAGTT CTGAAGAAAA CGTTGACAAG GCCATCGAAC TCATAAGGGA AATAGCCAAA
GAAATAGAAG TGGGAGAAGT TCTGGAAGGA AAGGTCACAA GGATAGAACC TTACGGACTG
TTCATAGAGG TGAGACCAGG TAAGATAGGC CTCCTTCATC AGAGCAAAGT AGGAGAAGAT
ATGAGGCAGT TCTTGAAAAA GGTGAAAGTC GGTGATACCA TAAAGGTACA GGTGATCAAC
ATAGACGACC TCGGAAGACT GCAGTTCAAA CGTGTCACAG AGGGGGAAAA CACTCAGCAT
GGAAAGACAC ACAGTAAACG AAATTGA
|
|---|
| Protein sequence | MKEWRRNILG RELVVQYGKV AKQSSGSALV RFGDTVVLAT ANISDKAVEG IDFVPLTVEF
QERFYAAGKI PGGFIKREGK PSESAILSAR LIDRPIRPLF PKKLRNEVQV IVTVLSVDPN
VPPDVVGIFA ASLALNVSKI PFEGIVAGIR VGYRDGQFIA LPSEEDIEKG LMDITVAGTK
DAVTMVEGEA KEVAEEDMVK ALRFAHSVIK ELVDFQEEIL SEFNVEKIPV VEPTPPEGLV
EAFKDLLNKE ELERRILVKV KKEREVALKE YEEQLLNQIA EKLSVTDLEG IKPFVSELYE
DAVKKTMRRL IVEKGIRADG RKPTEIRPIS CEVGLFPRTH GSALFTRGET QSLGIVTLGA
PMDVQIIDTL LEEGVKRFML HYNFPPFCTG EVKPLRGPSR REIGHGHLAE RALKNMLPPE
EEFPYTIRVV SEILESNGSS SMATVCSGSL ALMDAGVPIK KHVAGIAMGL ILEEDAEIIL
TDIIGMEDHY GDMDFKVAGT RDGITAFQMD CKVSGVSDEL LMKALMQARE ARMYILDRMY
ETISAPRPHL SKYAPIIKVT KVDPEKVADV IGPGGRVIKK IIKDFDVKVE IDDETGLVKV
VGSSEENVDK AIELIREIAK EIEVGEVLEG KVTRIEPYGL FIEVRPGKIG LLHQSKVGED
MRQFLKKVKV GDTIKVQVIN IDDLGRLQFK RVTEGENTQH GKTHSKRN
|
|---|
| |