| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1350 |
|---|
| Symbol | |
|---|
| ID | 5170080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 1341702 |
|---|
| End bp | 1342529 |
|---|
| Gene Length | 828 bp |
|---|
| Protein Length | 275 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640563875 |
|---|
| Product | hydroxymethylbutenyl pyrophosphate reductase |
|---|
| Protein accession | YP_001244940 |
|---|
| Protein GI | 148270480 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.118021 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAAATAG TGGTGGCAAA GAACATCGGT TTTTGTTTCG GAGTGGAAAG AGCGATAAGA
ACCGTGGAGG AGCTACTCGA TGAAGGAAAG AAAGTGGTAA CAGATGGAGA GATAGTCCAC
AACAAACAGG TGATGGAAAA ACTGACAAAA AAAGGATTGA AGGTGTCTTC GGAGATAACA
GACGGAGAAG TGTTCGTTGT AAGGGCCCAC GGTATCCCGA AAGACAGGCT CGAGGAACTG
AAAAGGATCT TTCCAGAGGT TGTCGATCTC ACTTGCCCCA TAGTTTCTCA ACTGTTCAAG
ACCGCTCAAA GATATGCCAA AGAGAGAAAA GTCATCGTTT TTGGAAAGGA AGACCACCCG
GAAATGGTGG CGCTGAAAGG ATACGCTCCT GCCATCGTCA CGAAGGTTCC GTTCAAGCTC
GAAGAGAAAA AGGTGGTCTT TCTCTCTCAA ACCACTTCTT CACTTGAAGA ATACAAAGAG
TTCGTTGTAA CGATGATCAG GATGAACGAA TTCGAAGAAG CCGTTTTCCT CAACACCATA
TGCCCCGTAA CTGTGAACCG AGAAAGGGAA GTGGAAGAGC TTTCGAGGAT CTGCGAACTT
TCTATAGTGG TTGGAGGAAG ACATAGTTCA AACACCGGGA AACTCTTCAG AATCGCTTCA
AAACACTCAA AAACGATCTG GATAGAGTCA CCTGACGAAT TGCCAGCGGA CGTAGTAAAA
TATGGTACGG TGTGTGTGTT CAGCGGTACC TCTACACCCA ATTCTCTGAT AGAAAATGTT
GTCAGAAAAC TGAAAGAGAT GGAGGGGAAG AGAGATGGAA CCATTTGA
|
|---|
| Protein sequence | MKIVVAKNIG FCFGVERAIR TVEELLDEGK KVVTDGEIVH NKQVMEKLTK KGLKVSSEIT
DGEVFVVRAH GIPKDRLEEL KRIFPEVVDL TCPIVSQLFK TAQRYAKERK VIVFGKEDHP
EMVALKGYAP AIVTKVPFKL EEKKVVFLSQ TTSSLEEYKE FVVTMIRMNE FEEAVFLNTI
CPVTVNRERE VEELSRICEL SIVVGGRHSS NTGKLFRIAS KHSKTIWIES PDELPADVVK
YGTVCVFSGT STPNSLIENV VRKLKEMEGK RDGTI
|
|---|
| |