Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1349 |
Symbol | |
ID | 5170093 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | - |
Start bp | 1340084 |
End bp | 1341715 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640563874 |
Product | RNA-binding S1 domain-containing protein |
Protein accession | YP_001244939 |
Protein GI | 148270479 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.143474 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAACCAT TTGAATTCAA CGATGAAATC CTCAGCCAGT ACGAACCTGA GGAGTTCAGA AGGGGGCAGA TCGTAACGGG AGTGGTTATA GGTAAGGAAG ACGGCGGCGT GGTGGTGGAT TTCGGGGGAA AAAGTGAAGG ATTCGTACCG GAGAACGAAC TGATCAAATC ATTAGATGAG TACAAAGTGG GTGAGAATCT CACCCTTCAA ATACTGAATC TGAACTACGA AGAGAGATCT ATTCTCTCAG AGAGGAGACC CGTTCTTCGA AAAACACTCG AAGAGTTGAG AAAAGATTAC GAAGAAAAGA AACCTGTGAA AGCCCGCATT GTTTCGCAGA CAAAGGGAGG ATACAACGTT TTATTGAAAG GAGTAGTCTC TGCTTTTCTT CCAGGATCAC ACTCTCTTCT CAGAAGAAAC GATCCTATAC CTGAAAAAGA AATAGAAGTC ATCATTCTGG AAATGGTACA GACAAAACGG GGATCCAGAA TAGTTGTTTC GCGAAGAGCT CTCCAGGATA GGAAAATTGA AGAGTTCTTC TCAGAAAAGA AAGTGGGGGA TATCATAGAA GGTACCGTGA AAGGGATCAG CAACGCAGGT GTCGAGGTTG AAATTTCGGA GGGAATTAGG GGATTCATCC CCAAGAGCGA ACTCAGCTAC GACAACAGGA TATCCCCTGA AGACGTAGTG AAACCCGGCC AGAACATAAC AGCGAAGATA ATCGAACTGG ACGAGAGAAA AAAGAACGTC ATCCTGAGTT TGAAAAGACT CATGCCCGAT CCGTGGGAAA AAGTGAAGGA GAAATACCCG GTTGGAAAAG TGGTGGGTGG AGAAGTTATT TCGATTCATT CGTTTGGATT TTTTGTGAGG CTGGAGCCCG GTGTGGAAGG ACTCGTTCCG AGATCTGAGG TCTTCTGGGG GAATGCAAGA AAAAACCTAG AAGAAGTAGT GAGTGTTGGA GATCTGGTGA AGGTTGAAGT TATCAATGTA GATAAAGAAA ACAGAAAACT CACTCTGAGT TACAGAAAAG CAAAGGGAGA TCCATGGGAA AACATCGAGG ACAGATACAA TGTCAACAAC GTGGTGACGG GAAAGGTGAC AGGAATCATA AAACAGGGAG CTTTTGTCGA GTTAGAAGAA GGCGTTGAAG GATTCGTCCC CGTCTCTGAA ATTTCGTGGA AAAGAATCGA CGAACCCGGA GAAATTCTAA AGATCGGTGA AAAAGTGAAG GTGAAGATCT TGAAGATAGA CAAAGAAAAC AGAAAGATCA CTCTCAGCAT AAGAAGAACC CAAGAAAATC CTTGGGAACG TGCACTCAAA GAGTTGAAAC CAGATTCTAT TGTGAGGGGG ACCATAGAAA GAATCGTGAA CTCAGGAGTG ATAGTAAAAG TCGAAAAGTA CGATGTGGAA GGTTTCGTGC CGAACAACCA TCTTGTCAGT GAACCTGAAA CGGGGAAAAT TTTAAACCTC GTTGTTCTTA GAATAGATCC CGATGAAGTG TTTGGCGGAA GAATGATACT GAGTGAGAAG CGATATGAAG AGAGAAAGAA CATAGAGGAG TACAAAAAAA TGGTAGAGAA GGAGAGTTCT CAGAAAACCA TTGGAGACCT TCTCAAGAAG AATGGAGAGT GA
|
Protein sequence | MEPFEFNDEI LSQYEPEEFR RGQIVTGVVI GKEDGGVVVD FGGKSEGFVP ENELIKSLDE YKVGENLTLQ ILNLNYEERS ILSERRPVLR KTLEELRKDY EEKKPVKARI VSQTKGGYNV LLKGVVSAFL PGSHSLLRRN DPIPEKEIEV IILEMVQTKR GSRIVVSRRA LQDRKIEEFF SEKKVGDIIE GTVKGISNAG VEVEISEGIR GFIPKSELSY DNRISPEDVV KPGQNITAKI IELDERKKNV ILSLKRLMPD PWEKVKEKYP VGKVVGGEVI SIHSFGFFVR LEPGVEGLVP RSEVFWGNAR KNLEEVVSVG DLVKVEVINV DKENRKLTLS YRKAKGDPWE NIEDRYNVNN VVTGKVTGII KQGAFVELEE GVEGFVPVSE ISWKRIDEPG EILKIGEKVK VKILKIDKEN RKITLSIRRT QENPWERALK ELKPDSIVRG TIERIVNSGV IVKVEKYDVE GFVPNNHLVS EPETGKILNL VVLRIDPDEV FGGRMILSEK RYEERKNIEE YKKMVEKESS QKTIGDLLKK NGE
|
| |