| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1344 |
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| Symbol | |
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| ID | 5171505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 1333490 |
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| End bp | 1336171 |
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| Gene Length | 2682 bp |
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| Protein Length | 893 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640563869 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001244934 |
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| Protein GI | 148270474 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000252576 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTGAGA TTCTTCTGCT GCCGAACGAA AGGTTTTCGA ATATAGAAGG ATACATTTTC
TATCCTTCGA GAGATGTTTT GCCTCTCGAA GATGTTGTTT TGTCACCCGA GATAAAAGGA
AAAAGAATAG AAATCCTGTG GAAACTGTTG AGCGGAGAGA ACCTCAAAAT AGTCACCACT
CTGAAAGCAC TCACCGAAAA GGTGTTTCCA CCCGATTTTC TGAGAGAAAA TTCCCTGATG
ATAACACGAT CCACAAAACT TGCCTTGTCT CCAGAAAAAC TCGTTGAAAT GGGGTATGAA
CGCGTTTTCA CCGTTCAAAA TGTGGGAGAA TTTGCCATTC GTGGAGATAT AGTCGACATT
TATTCTCCGG GGAACGACTT TCCTGTAAGA ATAGAGTTGT TCGGAGACGA AATCGAAGAA
ATCCGTTTCT TCAATGTAGA TACCCAACGT TCATTTCAGA GTGTTGATAG AACTCTGATA
CTTCCTTTTG TTGATTTCTA CGGTGAAAGC ACCCTGCTCG ATTTTGTAAA AACGGAAGTT
CGCTTTGTAT GTGAAGATCT TCAAAAGGTT CTGGATGAAT ACAGAAAGTT CAGGAAAGAA
ATGAGGGACC TTTTGAAGGA ACGCTACAAC GACTTCTTTG ATGAAAGAGT AGTCGAAGTG
GTACTCAAAA ACGTTGAGAA GGGTTCTGCA CCACTATCAA CACGTATTGA GAAGAAAGAA
TCGCTGCCCA TTCTGGATGT CGATGAGATC GAAGAGGGTG GACTCGTAGT TCACAGAGAA
CACGGAATAG CCATTTTCGA AGGGGTTGTT CGGCTCAAGG GAGTTCTCGG AGAGAGGGAT
TATTTGAAGT TGAAATATGA AGACGCAGTT TTGTATGTTC CCATCGAGAA GATCGACAGA
GTTCATAAAT ATATAGGTGA TCCTTCGCAG GTTAAACTCG ACCGGATGAA CCGTGGCAAA
TGGAAACAAA CACTGAAGAA AGTGAGAGAA GACATCGAGA AAAAGATCAG AGAACTCGTT
GAACTTTACA TGAGAAGGCA GGAAATTCAG GGTCTTTCTC TTCCAGGTGA CCCAGAACTG
GAAGAAAAAT TTGCGGAATC TTTTCCATAC ATTGAAACCC CCGATCAGCA ACAGAGTATA
GAGGAAGTGC TGAGTGATCT TGCCTCTGAA AAACCAATGG ACAGACTCCT GTGTGGAGAT
GCGGGTGTTG GAAAAACAGA AGTAGCTTTG CGAGCTGCGT TTCGTGCAGT CGCATCTGGT
AAACAGGTAG CGGTGCTTGT ACCAACCACC GTTCTGGCAA GACAACACTA CGAGAACTTC
AAAGAGAGAA TGGAACCGTT CGGTGTAAAA GTGGAACTCC TGGACAGTTC AAGAACACCG
AGAGAAAAGA AGGAGATCAT CGAAAAGCTG AAGAAGGGAG AAATAGACAT CATCATAGGT
ACACACTCTC TGTTGAACGA ACGGATCGAA TTCTCCGATC TTGGTCTTGT CATCATCGAC
GAAGAACAAA AGTTTGGAGT TGAGCAAAAA GAAAGGTTCA AGAAACTGAG ACTCTCGGTG
AACGTGCTAA CCCTGAGTGC TACACCTATT CCACGCACCC TCCACATGGC CCTCTCTGGA
ATGAAAGATT TTTCTGTGAT AAATTCTCCT CCCCCTGGAA GAAAACCAGT ATACGTTTAT
GTCGCAGAGT ACAGCGATGA TCTCGTCAAG GGAGCGGTGA TCAGGGAGAT AAACAGGGGA
GGTCAGGTGA TCTACGTTCA CAACCGCGTG GAAGAACTAC CGGAGGTTTT CGAAAAACTG
AAAAGGATGT TTCCGGAGTT GGAAATAGCG GTTGCCCACG GAAAGATGTC TAGAAGAACT
ATGGAGAGAA TTGTCCACGA GTTCTACCGC GGGAACATCG ATGTTCTTCT GTGTACCACA
ATTATCGAGA ATGGTGTTGA TATACCGAAT GCAAACACAC TCATAGTGGA TGACGCACAC
AGATACGGCC TTTCACAGCT CTATCAGCTC AGAGGAAGGG TGGGTAGAAG CGACCGAAGG
GCCTTTGCGT ACTTCCTGTA CCCAAAGGGT ACTCCAAGAA GCGCTCTTGA AAGACTGAAG
GTGCTTAAAT CCTACACAGG CTTTGGAAGC GGTCTTCAAA TAGCGTTGAA AGATATGGAA
CTGAGAGGTG TGGGAGATGT CCTCGGTTTG GAACAGCATG GAAATGTTGT GTCCGTTGGT
TTGAAACTGT ACAACGAAAT CTTGAAAGAG ACCATCACGA GATTCAAAGA AAGACGAATC
GAAAAGAAAC ACTCTGTGAA CGTTGAAATA GAAAATCCCC CGGGCAGATT TTTCATACCG
GAAGATTACG TGCAGAATCC TGTAGAGAGG TTGAGACTTT ACAGAAGACT CGCATCCTCT
CTTGATGAGG AAGATCTCGA GGAAATACTG GAGGAAATGA GGGATAGATT CGGAGAACCA
CCCGAAGAAG TGAAGTTACT CGTTGATTAC TTCAGATTGA GGATCAGAGC TTCGAAGCTG
GGAGTAAAGA AGATCAGATT CGATCACTCA ATGGTGGAAA TCTTTCCAAA CAGAGACTCG
CCGTTTTTGA ATCATCCGAG ATACAATAGA CGGTCGGGAA GTGTTGTTCT CTACACCAGG
GAGAATCCGG TGGAGTTTCT CATGGACTTA CTGAAAAAAT GA
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| Protein sequence | MVEILLLPNE RFSNIEGYIF YPSRDVLPLE DVVLSPEIKG KRIEILWKLL SGENLKIVTT
LKALTEKVFP PDFLRENSLM ITRSTKLALS PEKLVEMGYE RVFTVQNVGE FAIRGDIVDI
YSPGNDFPVR IELFGDEIEE IRFFNVDTQR SFQSVDRTLI LPFVDFYGES TLLDFVKTEV
RFVCEDLQKV LDEYRKFRKE MRDLLKERYN DFFDERVVEV VLKNVEKGSA PLSTRIEKKE
SLPILDVDEI EEGGLVVHRE HGIAIFEGVV RLKGVLGERD YLKLKYEDAV LYVPIEKIDR
VHKYIGDPSQ VKLDRMNRGK WKQTLKKVRE DIEKKIRELV ELYMRRQEIQ GLSLPGDPEL
EEKFAESFPY IETPDQQQSI EEVLSDLASE KPMDRLLCGD AGVGKTEVAL RAAFRAVASG
KQVAVLVPTT VLARQHYENF KERMEPFGVK VELLDSSRTP REKKEIIEKL KKGEIDIIIG
THSLLNERIE FSDLGLVIID EEQKFGVEQK ERFKKLRLSV NVLTLSATPI PRTLHMALSG
MKDFSVINSP PPGRKPVYVY VAEYSDDLVK GAVIREINRG GQVIYVHNRV EELPEVFEKL
KRMFPELEIA VAHGKMSRRT MERIVHEFYR GNIDVLLCTT IIENGVDIPN ANTLIVDDAH
RYGLSQLYQL RGRVGRSDRR AFAYFLYPKG TPRSALERLK VLKSYTGFGS GLQIALKDME
LRGVGDVLGL EQHGNVVSVG LKLYNEILKE TITRFKERRI EKKHSVNVEI ENPPGRFFIP
EDYVQNPVER LRLYRRLASS LDEEDLEEIL EEMRDRFGEP PEEVKLLVDY FRLRIRASKL
GVKKIRFDHS MVEIFPNRDS PFLNHPRYNR RSGSVVLYTR ENPVEFLMDL LKK
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