| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1343 |
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| Symbol | |
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| ID | 5171651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | + |
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| Start bp | 1332251 |
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| End bp | 1333474 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640563868 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001244933 |
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| Protein GI | 148270473 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000000061259 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAAGA AGGAAAAAGT CACAATGAAC GAAGAACAGC AGGTTCTTCA GGAACAGCAC
CAGGAGCAGA CGCAGGAGCA GACACAGGAA CAGAAAGAAA CGCTTCCTCC TCAGGTAGAA
AAACGTATAA AAAAACTCAT CAGTTTAGGA AAAAAGAAAG GTTACATAAC ATATGAGGAT
ATAGATAAAG CTTTTCCTCC AGACTTCGAA GACTTTGATA CGAATCTGAT AGAGAGAATA
CATGAAGAAC TGGAAAAACA TGGAATAAAC ATTGTGGAAA GTGAATCTGA GGAAGAAGAA
ATGAGTGTTC CCGGTGACGA ACAGGAACTA GAAGAACTTT TGGAGAGAGA ATCCCCTGAG
ATACACGATT CGAGCAACGT AAGGGATTCC ATCAAGATGT ATCTCAAAGA GATAGGAAAA
ATACCACTTC TAACACCAGC TCAAGAACGT GAACTCGCAA GACGAGCACA GATGGGCGAT
AAAAAGGCCA AAGAGAAACT AATAACATCG AATCTGAGGC TTGTTGTCAG TATAGCTAAG
CGCTACATGG GACGCGGTCT TTCTTTCCAG GACCTCATAC AGGAAGGAAA CATAGGACTT
CTGAAGGCGG TAGAGAAGTT CGACTGGAGG AAGGGTTACA AATTCAGTAC GTACGCTACC
TGGTGGATCA GACAGGCAAT CACAAGAGCG ATAGCGGATC AGGCAAGGAC CATCAGGATA
CCTGTCCACA TGGTGGAAAC TATAAACAAA CTGAACAGGT TGAGAAGAGA GTACTATCAG
AAACACGGTG AAGAACCATC CATAGAAGAA CTCGCAAAGA TGATGGGCAA ACCCCCAGAA
AAGATAAAGG AAATACTCGA AGCAGCGAAG GAAACCATAT CCCTGGAATC TCCTATAGGT
GAAGATGAAG ATTCTTCCAT CGAAGACTTT GTGGCTGACG ATTCCATAGC CTCTCCAAAG
AAAGAGGCCA TGAGGATGCT CATGAGAGAA GAACTCGAGA AAGTCTTGAA AACTCTGAGC
CCGAGAGAAG CGATGGTTCT GAGAATGAGG TACGGCTTGC TCGATGGAAA ACCAAAAACG
CTTGAAGAAG TTGGCCAGTA TTTCAATGTC ACAAGAGAAA GGATCAGGCA GATAGAAGTC
AAAGCACTGC GGAAGTTGAG ACATCCATCG AGGAGCAAGT ATCTGAAATC ACTGCTCTCT
CTGATGGATG AAAACGAAGG GTGA
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| Protein sequence | MAKKEKVTMN EEQQVLQEQH QEQTQEQTQE QKETLPPQVE KRIKKLISLG KKKGYITYED
IDKAFPPDFE DFDTNLIERI HEELEKHGIN IVESESEEEE MSVPGDEQEL EELLERESPE
IHDSSNVRDS IKMYLKEIGK IPLLTPAQER ELARRAQMGD KKAKEKLITS NLRLVVSIAK
RYMGRGLSFQ DLIQEGNIGL LKAVEKFDWR KGYKFSTYAT WWIRQAITRA IADQARTIRI
PVHMVETINK LNRLRREYYQ KHGEEPSIEE LAKMMGKPPE KIKEILEAAK ETISLESPIG
EDEDSSIEDF VADDSIASPK KEAMRMLMRE ELEKVLKTLS PREAMVLRMR YGLLDGKPKT
LEEVGQYFNV TRERIRQIEV KALRKLRHPS RSKYLKSLLS LMDENEG
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