Gene Tpet_1340 details

Gene Information

• Locus tag: Tpet_1340
• Symbol: rplM
• ID: 5170126
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga petrophila RKU-1
• Kingdom: Bacteria
• Replicon accession: NC_009486
• Strand: +
• Start bp: 1329224
• End bp: 1329673
• Gene Length: 450 bp
• Protein Length: 149 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640563865
• Product: 50S ribosomal protein L13
• Protein accession: YP_001244930
• Protein GI: 148270470
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0102] Ribosomal protein L13
• TIGRFAM ID: [TIGR01066] ribosomal protein L13, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0000100491
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTAGGT ACTTTCCTGT TCAGAAGACA ACTATGATAA AACCCGAAGA GGTTGAAAGA 
AAATGGTACG TGGTAGATGC TTCCGGAAAG GTTCTCGGAA GACTCGCGAC ACGCATAGCG 
AAGATATTGA TGGGGAAACA CAAGCCCAAT TACACTCCGC ACGTTGACAC GGGAGATTAC 
GTCATCGTTG TGAACGCTGA CAAGGTGGTT CTTACCGGAA AGAAGCTCGA TCAGAAGGTT 
TATTACTGGC ATTCTGGTTA TCCCGGAGGT CTGAAGTCTC TGACAGCAAG ACAGATGCTG 
GAAAAACATC CCGAAAGACT CATATGGCTC GCTGTCAAAA GGATGCTCCC GAAGAACAGA 
AAGGGCAGAA AAATGCTCAA AAGACTCAAA GTTTATGCGT CACCCGAACA TCCACATCAG 
GCACAGAAAC CTGAGCCTAT TGAACTGTGA 

 

Protein sequence

MARYFPVQKT TMIKPEEVER KWYVVDASGK VLGRLATRIA KILMGKHKPN YTPHVDTGDY 
VIVVNADKVV LTGKKLDQKV YYWHSGYPGG LKSLTARQML EKHPERLIWL AVKRMLPKNR 
KGRKMLKRLK VYASPEHPHQ AQKPEPIEL