| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1339 |
|---|
| Symbol | |
|---|
| ID | 5171471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1328665 |
|---|
| End bp | 1329231 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640563864 |
|---|
| Product | membrane protein-like protein |
|---|
| Protein accession | YP_001244929 |
|---|
| Protein GI | 148270469 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3601] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000324507 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAGTG AAAGAGTGAG CAGCATAAAG AAAATCTCCT TCGTGGGGAT TTTCTCAGCT
CTTGCAACTC TGGTGATGTT TTTGGAGTTT CCGATATTTC CACAAGCGAG TTTCCTGAAG
TACGATCCCA GTGAAATACC GGCGCTCATA GTGAGTTTCT TGCTGGGGCC CGGGGTCGGC
ATGTTTGTCG TCCTGGTGAA GGACATTCTC TTCTTCCTTA TGAAGTCCGG TGATCCTGTG
GGAATCGCGA TGAACGCTGT GCTGGGAATG TCCTTTGTGG GAATAGCTGG CCTCATTTAT
CACAGAAACA AGAGCAGAGC AACGGCAATA AAAGGCATGA TTGTCGCTAC ACTTTTCACC
ACAGCGTTCG CTCTGGGGTT GAATGCTCTC ATCGTGCCGC TTTACTTCAA GGCTCCGTTC
GAACTTTATC TAAAATTTTT CCCGTTCATA CTGGCTTTCA ATCTGGTGAA ATTTGGAATC
GACTCGTTTG TGACGTTCTT TGTTTACAAG AAAGTGTCCA GTATCTTTAA ACTGGAAACA
GTGGAAGGGA GGAGCAACAA TGGCTAG
|
|---|
| Protein sequence | MRSERVSSIK KISFVGIFSA LATLVMFLEF PIFPQASFLK YDPSEIPALI VSFLLGPGVG
MFVVLVKDIL FFLMKSGDPV GIAMNAVLGM SFVGIAGLIY HRNKSRATAI KGMIVATLFT
TAFALGLNAL IVPLYFKAPF ELYLKFFPFI LAFNLVKFGI DSFVTFFVYK KVSSIFKLET
VEGRSNNG
|
|---|
| |