| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1320 |
|---|
| Symbol | |
|---|
| ID | 5170134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1316006 |
|---|
| End bp | 1317016 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640563845 |
|---|
| Product | DNA-directed RNA polymerase subunit alpha |
|---|
| Protein accession | YP_001244910 |
|---|
| Protein GI | 148270450 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000100462 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGAGT TTGTGATACC GAAAAAATTA AAGGTGGAGG AAGAACGAGA GGAAAAGGAC
TATTATTATG CAAGATTTTC GCTTTCTCCG CTTGAAAGAG GATATGCCAT CACGATAGGA
AACGCATTGA GGAGAGTTCT TCTCTCCTCC ATACCTTCTC TCGCAATCGT TGGAGTGAGA
TTCATAAAGC CAGAAAAGTA CCATGAATAC GATTACATTG AAGGAGTAAA AGAAGACATA
CTGGATATAA TCCTGAACTT GAAGAAAGTT CAGTTTCGGG TCAACGTGAC TGTGAAAGGT
ACAATAAAGA TGGAGGTAGA AAAGAAGGGA CCGGGCGAAC TTGTCGCGGG TGATATAAAG
ACACCGGCTG GTATCGAAGT GGCGAATCCG GATCTACACA TCGCCACCTT GAATTCTAAA
GCAGATCTTT TCTTCGAAGT CTACGCAGAA GTGGGAAAGG GATTCGTTCC CGTGTCTGAG
AGGGAAGAAA GACCTGACGT GGGATGGATT CCAATAGATG GAGTTTTCAG CCCTGTGATC
AAAGTGAACT TTCTGACGGA AAACGTTCGT GTTGGAAAGA GGACGGATTA CGACAAGCTC
ATTCTTGAAA TCTGGACGAA GAAATCGATA AGACCTGAAG AGGCCCTCAG AAAGGCTGCG
GACATCCTGA TAAATCATTT CAAAATCGTG ACGGAGGGTC TGCCTGAACT GAAGATCTCC
GAGGAATACA TCATCACATC CGAGGAAGAA GAAGCAGAAA TTCCCGCCGT TGATCATGAA
GAAGAAAACA GGGAGAATCT GGATGTTTAC AACAGAAAGA TAGATGAACT CGAGCTTTCG
GTCAGATCTC TCAACTGTTT GAAGAGAGCT AAAATAGAAA CGATCGGAGA TCTTCTCAGC
AAAACAGAGG AAGAGCTTTT GAAGATAAAG AATTTTGGTC AGAAATCTCT CGATGAGGTC
AAGGAGAAAT TGAAAGAAAA ATTCGGTCTT GAGCTCAGGA AGGGGGAATG A
|
|---|
| Protein sequence | MIEFVIPKKL KVEEEREEKD YYYARFSLSP LERGYAITIG NALRRVLLSS IPSLAIVGVR
FIKPEKYHEY DYIEGVKEDI LDIILNLKKV QFRVNVTVKG TIKMEVEKKG PGELVAGDIK
TPAGIEVANP DLHIATLNSK ADLFFEVYAE VGKGFVPVSE REERPDVGWI PIDGVFSPVI
KVNFLTENVR VGKRTDYDKL ILEIWTKKSI RPEEALRKAA DILINHFKIV TEGLPELKIS
EEYIITSEEE EAEIPAVDHE EENRENLDVY NRKIDELELS VRSLNCLKRA KIETIGDLLS
KTEEELLKIK NFGQKSLDEV KEKLKEKFGL ELRKGE
|
|---|
| |