Gene Tpet_1307 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1307 
SymbolrplF 
ID5170009 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp1309365 
End bp1309919 
Gene Length555 bp 
Protein Length184 aa 
Translation table11 
GC content44% 
IMG OID640563832 
Product50S ribosomal protein L6 
Protein accessionYP_001244897 
Protein GI148270437 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0097] Ribosomal protein L6P/L9E 
TIGRFAM ID[TIGR03654] ribosomal protein L6, bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000236844 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCGAC TCGCGAAAAA GCCCATAGTC TTACCACAGG GTGTTACGGT TGAAATAAAA 
GACAACGTTG TTAAGGTGAA GGGACCCAAG GGAGAACTCA GTCAGGAATT TCTCCCTTAC
GTGAAAATAG AAGTTGAAGG TAATGAAGTC TGGGTAAGAC CCAACGAGAA TCAGATTATA
AGAAAATCTG ACTGGAGAAA GATAAAGATG TTCCAGGGAA CTTACTGGTC CCTCATCAGA
AATATGGTTG TTGGTGTAAC AGAAGGCTAC AAGAAAGAGC TGGAAATCGT AGGAATCGGT
TACAGGGCTC AGCTTCAGGG GAATACAGTA GTGATGAACC TTGGTTACGC TCATCCCGTT
GTTTACGAGA TACCCTCTGA TGTGAAAATT GAAGTTCCTG CACCGAACAG GATAGTTGTT
TCTGGCATCG ATAAACAGAG GGTTGGACAG GTTGCCGCTG AGATCAGAGC GTTCAGACCA
CCAAATGTCT ACACCGGAAA GGGAATCAGG TATGTTGGTG AAGTGGTGAG ACAGAAAGAA
GGTAAGAAAG CATAA
 
Protein sequence
MSRLAKKPIV LPQGVTVEIK DNVVKVKGPK GELSQEFLPY VKIEVEGNEV WVRPNENQII 
RKSDWRKIKM FQGTYWSLIR NMVVGVTEGY KKELEIVGIG YRAQLQGNTV VMNLGYAHPV
VYEIPSDVKI EVPAPNRIVV SGIDKQRVGQ VAAEIRAFRP PNVYTGKGIR YVGEVVRQKE
GKKA