Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1293 |
Symbol | rplD |
ID | 5171601 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | + |
Start bp | 1303244 |
End bp | 1303951 |
Gene Length | 708 bp |
Protein Length | 235 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640563818 |
Product | 50S ribosomal protein L4 |
Protein accession | YP_001244883 |
Protein GI | 148270423 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0088] Ribosomal protein L4 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000000803665 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTCAGG TGGATCTGTT GAATGTGAAG GGAGAAAAAG TAGGGACCCT GGAAATCAGT GATTTCGTTT TCAACATCGA TCCCAACTAC GACGTGATGT GGAGATACGT GGATATGCAG CTCTCCAACA GGAGAGCTGG AACTGCCTCT ACGAAAACAA GAGGAGAAGT CTCCGGTGGT GGCAGAAAAC CCTGGCCGCA GAAACACACC GGAAGAGCAA GACACGGTTC CATAAGATCC CCCATCTGGA GGCATGGAGG AATTGCACAC GGACCTAAAC CGAGAGACTG GAGCAAAAAG CTCAACAAGA AAATGAAGAA GCTCGCTCTG CGATCTGCTC TCTCTGTGAA GTACAGAGAA AACAAACTCT TCGTACTCGA TGATCTGAAA CTCGAAAGGC CGAAGACGAA ATTTCTGAAG GAAATCCTCC AGAACCTTCA GCTTTCCGAC AAGAAAACAC TGATCGTCCT TCCATGGAAA GATGAAGGAT ACATGAATGT GAAACTCTCT GGAAAGAACC TTCCCAACGT GAAGGTAATA ATTGCGGACA ATCCGAACAA CAGCAAAAAT GGTGAGAAGG CAGTAAGAAT AGATGGACTC AATGTTTTTG ACATGCTCAA GTACGATTAC CTTGTGCTCA CCCAGGACAT GGTTTCCAAG ATAGAGGAGG TGCTCGGAAA TGAAGCAGGA AAAGCTCTCA CTGAATGA
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Protein sequence | MAQVDLLNVK GEKVGTLEIS DFVFNIDPNY DVMWRYVDMQ LSNRRAGTAS TKTRGEVSGG GRKPWPQKHT GRARHGSIRS PIWRHGGIAH GPKPRDWSKK LNKKMKKLAL RSALSVKYRE NKLFVLDDLK LERPKTKFLK EILQNLQLSD KKTLIVLPWK DEGYMNVKLS GKNLPNVKVI IADNPNNSKN GEKAVRIDGL NVFDMLKYDY LVLTQDMVSK IEEVLGNEAG KALTE
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