Gene Tpet_1247 details

Gene Information

• Locus tag: Tpet_1247
• ID: 5170278
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga petrophila RKU-1
• Kingdom: Bacteria
• Replicon accession: NC_009486
• Strand: +
• Start bp: 1263943
• End bp: 1264563
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 640563771
• Product: Holliday junction resolvase YqgF
• Protein accession: YP_001244837
• Protein GI: 148270377
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0816] Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)
• TIGRFAM ID: [TIGR00250] RNAse H-fold protein YqgF

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.00416078
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGATAGTCG CTGTGGATTA CGGAGAAAGG AAATGTGGAG TCGCATTCGG AGAAATTCTC 
CCTCAAAAAA GTCTTGTTAT ACCCACAAAG AACCTGAAGG AATTCATCAG AAAGCTGAAA 
CCTGATAAAA TAATCTTTGG ATTACCTCTT TCGATGAGTG GAAAATACAC TCAGCAGACG 
TTCAAAACAA TCGCAGTTGC CTTCAAATTT TCAAAAGAGT ACGAGACATA TCTCTGTGAC 
GAAAGACTCA CCACGAAAAT AGGAGAAAGG ATCTCGAAAA AAGATGACGC CGTGAGCGCT 
GCTCTGATTT TTCAGTCTTT CTTCGAGAAT TCCTCGGTAT GTGAAAAAGT CACAGATCCA 
AGAAAAAAAG TCGATCTGAC TCTGGAAAAA GTCACTGGAG AAGTTCTCCT GTACGAGTTC 
CCGGATCCTT CTTTGAACAT CGAAGCAAGA GAAGTTGATG TGGTCACGAA AAATCCGGTT 
CTTGCTTATT TCTACAGTAA AAATGGATAC TTCGTTGAAA GAGAACTTCG GGAAAAGAAG 
TACGACCTGA TCATTTCTGG AAAAAACTGC GAAGAGTTGA ATAAATACCT GAAAGAAAAC 
GGTAGACTGG TGTGCCTGTA G 

 

Protein sequence

MIVAVDYGER KCGVAFGEIL PQKSLVIPTK NLKEFIRKLK PDKIIFGLPL SMSGKYTQQT 
FKTIAVAFKF SKEYETYLCD ERLTTKIGER ISKKDDAVSA ALIFQSFFEN SSVCEKVTDP 
RKKVDLTLEK VTGEVLLYEF PDPSLNIEAR EVDVVTKNPV LAYFYSKNGY FVERELREKK 
YDLIISGKNC EELNKYLKEN GRLVCL