Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1247 |
Symbol | |
ID | 5170278 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | + |
Start bp | 1263943 |
End bp | 1264563 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640563771 |
Product | Holliday junction resolvase YqgF |
Protein accession | YP_001244837 |
Protein GI | 148270377 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0816] Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) |
TIGRFAM ID | [TIGR00250] RNAse H-fold protein YqgF |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00416078 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATAGTCG CTGTGGATTA CGGAGAAAGG AAATGTGGAG TCGCATTCGG AGAAATTCTC CCTCAAAAAA GTCTTGTTAT ACCCACAAAG AACCTGAAGG AATTCATCAG AAAGCTGAAA CCTGATAAAA TAATCTTTGG ATTACCTCTT TCGATGAGTG GAAAATACAC TCAGCAGACG TTCAAAACAA TCGCAGTTGC CTTCAAATTT TCAAAAGAGT ACGAGACATA TCTCTGTGAC GAAAGACTCA CCACGAAAAT AGGAGAAAGG ATCTCGAAAA AAGATGACGC CGTGAGCGCT GCTCTGATTT TTCAGTCTTT CTTCGAGAAT TCCTCGGTAT GTGAAAAAGT CACAGATCCA AGAAAAAAAG TCGATCTGAC TCTGGAAAAA GTCACTGGAG AAGTTCTCCT GTACGAGTTC CCGGATCCTT CTTTGAACAT CGAAGCAAGA GAAGTTGATG TGGTCACGAA AAATCCGGTT CTTGCTTATT TCTACAGTAA AAATGGATAC TTCGTTGAAA GAGAACTTCG GGAAAAGAAG TACGACCTGA TCATTTCTGG AAAAAACTGC GAAGAGTTGA ATAAATACCT GAAAGAAAAC GGTAGACTGG TGTGCCTGTA G
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Protein sequence | MIVAVDYGER KCGVAFGEIL PQKSLVIPTK NLKEFIRKLK PDKIIFGLPL SMSGKYTQQT FKTIAVAFKF SKEYETYLCD ERLTTKIGER ISKKDDAVSA ALIFQSFFEN SSVCEKVTDP RKKVDLTLEK VTGEVLLYEF PDPSLNIEAR EVDVVTKNPV LAYFYSKNGY FVERELREKK YDLIISGKNC EELNKYLKEN GRLVCL
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