| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1246 |
|---|
| Symbol | |
|---|
| ID | 5170534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1261079 |
|---|
| End bp | 1263946 |
|---|
| Gene Length | 2868 bp |
|---|
| Protein Length | 955 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640563770 |
|---|
| Product | single-stranded-DNA-specific exonuclease RecJ |
|---|
| Protein accession | YP_001244836 |
|---|
| Protein GI | 148270376 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000605261 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGT GGGAACTTTC ACAGCCTGAT GAGAAGGCTG TGTCAGAGAT TTCTCAGTAT
TTTGGTCTCA ATGAAATTGC ATCGAGAATA CTCGTGAACA GAGGCTTCAC CACCAGAGAA
GCGGTAGAGG CTTTCCTGTT CATCAATGAA TCCCACCAGC ACAATCCCTT TCTCTTCAAC
GATATGGAAA AAGCGGTTGA AACCCTGCTT GAAGCCCGGT CCAGGAACGA GCTCGTTCTG
ATTCACGGAG ACTACGATGT GGATGGGATA ACTTCCACCG TTATATTGAA GGAATTTCTC
GAAGAGAACG GCTGGCGCGT TGATGTTTAT ATTCCACACC GTATCGAAGA GGGATACGGT
ATTCAGCTGG AAAACATCTT GACTTTTAAA GAGAACAACG TTTCCTGTCT TGTAACGGTT
GACTGCGGAA TAACCGCACT GGATTCGGTC GCTCTTGCGA AAAAATTCGG AATGAAAGTG
ATCATCACAG ACCACCACGA GGTGAACGGT GACCTCCCCC CCGCCGATGC CATTGTGAAC
CCGAAAGTAC CTGGAGAGAA CTACCCATTC AGAGATCTTG CGGGTGTCGG TGTAACCTAC
AAACTCGTCC AGGCCATTTC TGAGGCGATC AATTATCCCC ATCCCGAGAG ATTTTTGGAG
CTGGTAGCTC TTGGAACGGT CGCTGATATG GTCTCCCTCC TTGACGAAAA CAGATACTTC
GTGAAAAAAG GAATAGAACT GCTTTCAAAC ACAAAACGCG TGGGCTTAAA GAGGCTTCTG
GAAAGACTTG GCCTGAAGAA CCTCACATCG CACGATATCA GTTACAAAAT AGCTCCCCGT
CTCAACGCCG CTGGCCGTAT GGGCAGTGCC AACGACGCCT TCAATTTACT GATAATGAAC
GATCCAGCGA AAGCGGACGG TGTTGTGGAT AGGTTGATGG AGCTGAACAG CATCAGAAGG
AAAACAGAAT GGGCGATATA CAAAGAAGCA ATTGAAATAA TCGAGACAAA CGATCTGTGG
AAAGATCCCG TCATAGTCGT TGCAAAAGAA AACTGGCACG TGGGAGTCAT CGGCATAGTC
GCTGCCAAAC TGGCAAATCG TTATGAAAAA CCCGTTGCAG TCGTCTCTCT GGACGAGAAG
ATAGCGAAAG GTTCCATAAG GAGCTACAAC GGTTATGACA TAATGAACAT TTTCAACGAA
GATATTCTCA AAATATTCGA GGAGATAGGT GGCCATTCTT CAGCGGTTGG TTTCTCCTTG
AAAAGAGACC AACTGGAATC GTTCAGGGAA TACATCAGAA ACATTTCTCT GGAGGGACGA
GAAGAGAAGG TGATCGTTGA TGCTGAAGTC AGAATGGAAG ATATTGATGA TCGCTTCATT
GAAGATATAA AAAAACTCAT GCCCTTCGGT CAGGGAAATC CGGAACCTGT TCTTCTCTTC
AAAGACGTAC TGATAGAAAA GATTCATTTC TTTGGAGAAG ACGGTAGCAA CGTGTTCCTT
CACCTGAAAA ACGGCGAAAA GAACCTGGAA GTTGTGGGAT ACAATTTCAA GAACCTCTCG
AGTTCTCTCT CTACATTACC AGTAACTCCC ACCAGAGGAG ACGTTGTGGT GAATCTACGT
CCCATGGGAA ATGGAATTTC TTACTATCTT GTCTCGCTGG ATGTAAAGCC TATTCTTTCT
GTAAAAAACA GAGAAGTGAG TCATATACTG AGTAGACCTA AAGAAGAAAA AACACTGATA
AAAGTACCTT ACCCATCAAA AACAAAGCTT CTGCTGTCCA TAAAGGAAGA GCTTCAGGGA
AAACTGGCGA TCGTTTCTTT AACGAACGCC ACGACTCAAA ACATTCTGGG GTGCCTTTCG
AGGTACTACA CCTCCAAAAA CTTGGGATTT GTAAATTCTA CCTTTTCCAA GGAAGAAGAA
AGCGATATTG TCCTCTTCAC CCTTGCAGGT TTTCTGAAGA AACACCGTCT GGATGATTTT
GAAGTATTTG TGGTGAACGA GTTCCAAGAT TTTCTGGCGC ATCGCGACAG CGAACTGGTC
AAAAACTTCC TGGACATAGT CGACAAACAC CCAGGAAAAT TCATCTTCGT TGCCTCGATA
GAACACCCAG AGCTGGAAGA GTTTCTGAAA AAGGAAAAAT ACGATGTCGT TGAGCTGAGA
ACCGACGAAC CGGAGAAATT TCTGTTCTCC GATCAGAGAA ATTCTTTCGA CTTAGGTTCT
CTTGTGGACG CTCACAGTTT CGCGGTGGTT GTTTCTGAGA AAAAACTCAT ACCAGATCTT
TATCGGAAGA TTGGCAAAGA TGCGGTCGTT TACTACACAA GCATGGATGT GGAAAAGAAA
ATAAAGGCAA TCAGCTTGAT GGAGAGCGGT TCTGCTCGAA AAGCGATCAT CACAAGCAAC
ACCGATGGGC TTCCGACCCA CATAAAAGGC GATATCTTCT TTTACGACTT CCCACTCAGC
ATTTACGAAA TAGTGGATCT TTTGAGAAGA AAATCGGTGG TTAACCTCTG CTACTCTTCC
TCCGACATTG AAAAGCGTCG ATACGAGCTC AACAAGCTGT TTCCGGATCG TGAAAAGCTA
AAAGAAATAG CGATCACAGC GATGAATCTG AAAGACAAAG AAAAACTGGA GAAGATTTTG
GAGAGCGAGT ACGATCTGAG CAGTGCCACT TTGAGAAAGA TTTATTTGGA CCTTCTGGAA
GAATCCGGGT TCAACTTCGA TAGATGGAGT TTTTCGGAAG ATGAAAGGAT ACCTTGGAGA
TTGCTTGAGA GAGAGCTCGA AATAGCCCAG TTCGAAAGGA CGGTTTCCGT TCTTTCAAAG
GATCTGAAGT GGATATTCAA CTTTTTCAAG GATACGGTGG TAAAGTGA
|
|---|
| Protein sequence | MKKWELSQPD EKAVSEISQY FGLNEIASRI LVNRGFTTRE AVEAFLFINE SHQHNPFLFN
DMEKAVETLL EARSRNELVL IHGDYDVDGI TSTVILKEFL EENGWRVDVY IPHRIEEGYG
IQLENILTFK ENNVSCLVTV DCGITALDSV ALAKKFGMKV IITDHHEVNG DLPPADAIVN
PKVPGENYPF RDLAGVGVTY KLVQAISEAI NYPHPERFLE LVALGTVADM VSLLDENRYF
VKKGIELLSN TKRVGLKRLL ERLGLKNLTS HDISYKIAPR LNAAGRMGSA NDAFNLLIMN
DPAKADGVVD RLMELNSIRR KTEWAIYKEA IEIIETNDLW KDPVIVVAKE NWHVGVIGIV
AAKLANRYEK PVAVVSLDEK IAKGSIRSYN GYDIMNIFNE DILKIFEEIG GHSSAVGFSL
KRDQLESFRE YIRNISLEGR EEKVIVDAEV RMEDIDDRFI EDIKKLMPFG QGNPEPVLLF
KDVLIEKIHF FGEDGSNVFL HLKNGEKNLE VVGYNFKNLS SSLSTLPVTP TRGDVVVNLR
PMGNGISYYL VSLDVKPILS VKNREVSHIL SRPKEEKTLI KVPYPSKTKL LLSIKEELQG
KLAIVSLTNA TTQNILGCLS RYYTSKNLGF VNSTFSKEEE SDIVLFTLAG FLKKHRLDDF
EVFVVNEFQD FLAHRDSELV KNFLDIVDKH PGKFIFVASI EHPELEEFLK KEKYDVVELR
TDEPEKFLFS DQRNSFDLGS LVDAHSFAVV VSEKKLIPDL YRKIGKDAVV YYTSMDVEKK
IKAISLMESG SARKAIITSN TDGLPTHIKG DIFFYDFPLS IYEIVDLLRR KSVVNLCYSS
SDIEKRRYEL NKLFPDREKL KEIAITAMNL KDKEKLEKIL ESEYDLSSAT LRKIYLDLLE
ESGFNFDRWS FSEDERIPWR LLERELEIAQ FERTVSVLSK DLKWIFNFFK DTVVK
|
|---|
| |