Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1246 |
Symbol | |
ID | 5170534 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | + |
Start bp | 1261079 |
End bp | 1263946 |
Gene Length | 2868 bp |
Protein Length | 955 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640563770 |
Product | single-stranded-DNA-specific exonuclease RecJ |
Protein accession | YP_001244836 |
Protein GI | 148270376 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000605261 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAGT GGGAACTTTC ACAGCCTGAT GAGAAGGCTG TGTCAGAGAT TTCTCAGTAT TTTGGTCTCA ATGAAATTGC ATCGAGAATA CTCGTGAACA GAGGCTTCAC CACCAGAGAA GCGGTAGAGG CTTTCCTGTT CATCAATGAA TCCCACCAGC ACAATCCCTT TCTCTTCAAC GATATGGAAA AAGCGGTTGA AACCCTGCTT GAAGCCCGGT CCAGGAACGA GCTCGTTCTG ATTCACGGAG ACTACGATGT GGATGGGATA ACTTCCACCG TTATATTGAA GGAATTTCTC GAAGAGAACG GCTGGCGCGT TGATGTTTAT ATTCCACACC GTATCGAAGA GGGATACGGT ATTCAGCTGG AAAACATCTT GACTTTTAAA GAGAACAACG TTTCCTGTCT TGTAACGGTT GACTGCGGAA TAACCGCACT GGATTCGGTC GCTCTTGCGA AAAAATTCGG AATGAAAGTG ATCATCACAG ACCACCACGA GGTGAACGGT GACCTCCCCC CCGCCGATGC CATTGTGAAC CCGAAAGTAC CTGGAGAGAA CTACCCATTC AGAGATCTTG CGGGTGTCGG TGTAACCTAC AAACTCGTCC AGGCCATTTC TGAGGCGATC AATTATCCCC ATCCCGAGAG ATTTTTGGAG CTGGTAGCTC TTGGAACGGT CGCTGATATG GTCTCCCTCC TTGACGAAAA CAGATACTTC GTGAAAAAAG GAATAGAACT GCTTTCAAAC ACAAAACGCG TGGGCTTAAA GAGGCTTCTG GAAAGACTTG GCCTGAAGAA CCTCACATCG CACGATATCA GTTACAAAAT AGCTCCCCGT CTCAACGCCG CTGGCCGTAT GGGCAGTGCC AACGACGCCT TCAATTTACT GATAATGAAC GATCCAGCGA AAGCGGACGG TGTTGTGGAT AGGTTGATGG AGCTGAACAG CATCAGAAGG AAAACAGAAT GGGCGATATA CAAAGAAGCA ATTGAAATAA TCGAGACAAA CGATCTGTGG AAAGATCCCG TCATAGTCGT TGCAAAAGAA AACTGGCACG TGGGAGTCAT CGGCATAGTC GCTGCCAAAC TGGCAAATCG TTATGAAAAA CCCGTTGCAG TCGTCTCTCT GGACGAGAAG ATAGCGAAAG GTTCCATAAG GAGCTACAAC GGTTATGACA TAATGAACAT TTTCAACGAA GATATTCTCA AAATATTCGA GGAGATAGGT GGCCATTCTT CAGCGGTTGG TTTCTCCTTG AAAAGAGACC AACTGGAATC GTTCAGGGAA TACATCAGAA ACATTTCTCT GGAGGGACGA GAAGAGAAGG TGATCGTTGA TGCTGAAGTC AGAATGGAAG ATATTGATGA TCGCTTCATT GAAGATATAA AAAAACTCAT GCCCTTCGGT CAGGGAAATC CGGAACCTGT TCTTCTCTTC AAAGACGTAC TGATAGAAAA GATTCATTTC TTTGGAGAAG ACGGTAGCAA CGTGTTCCTT CACCTGAAAA ACGGCGAAAA GAACCTGGAA GTTGTGGGAT ACAATTTCAA GAACCTCTCG AGTTCTCTCT CTACATTACC AGTAACTCCC ACCAGAGGAG ACGTTGTGGT GAATCTACGT CCCATGGGAA ATGGAATTTC TTACTATCTT GTCTCGCTGG ATGTAAAGCC TATTCTTTCT GTAAAAAACA GAGAAGTGAG TCATATACTG AGTAGACCTA AAGAAGAAAA AACACTGATA AAAGTACCTT ACCCATCAAA AACAAAGCTT CTGCTGTCCA TAAAGGAAGA GCTTCAGGGA AAACTGGCGA TCGTTTCTTT AACGAACGCC ACGACTCAAA ACATTCTGGG GTGCCTTTCG AGGTACTACA CCTCCAAAAA CTTGGGATTT GTAAATTCTA CCTTTTCCAA GGAAGAAGAA AGCGATATTG TCCTCTTCAC CCTTGCAGGT TTTCTGAAGA AACACCGTCT GGATGATTTT GAAGTATTTG TGGTGAACGA GTTCCAAGAT TTTCTGGCGC ATCGCGACAG CGAACTGGTC AAAAACTTCC TGGACATAGT CGACAAACAC CCAGGAAAAT TCATCTTCGT TGCCTCGATA GAACACCCAG AGCTGGAAGA GTTTCTGAAA AAGGAAAAAT ACGATGTCGT TGAGCTGAGA ACCGACGAAC CGGAGAAATT TCTGTTCTCC GATCAGAGAA ATTCTTTCGA CTTAGGTTCT CTTGTGGACG CTCACAGTTT CGCGGTGGTT GTTTCTGAGA AAAAACTCAT ACCAGATCTT TATCGGAAGA TTGGCAAAGA TGCGGTCGTT TACTACACAA GCATGGATGT GGAAAAGAAA ATAAAGGCAA TCAGCTTGAT GGAGAGCGGT TCTGCTCGAA AAGCGATCAT CACAAGCAAC ACCGATGGGC TTCCGACCCA CATAAAAGGC GATATCTTCT TTTACGACTT CCCACTCAGC ATTTACGAAA TAGTGGATCT TTTGAGAAGA AAATCGGTGG TTAACCTCTG CTACTCTTCC TCCGACATTG AAAAGCGTCG ATACGAGCTC AACAAGCTGT TTCCGGATCG TGAAAAGCTA AAAGAAATAG CGATCACAGC GATGAATCTG AAAGACAAAG AAAAACTGGA GAAGATTTTG GAGAGCGAGT ACGATCTGAG CAGTGCCACT TTGAGAAAGA TTTATTTGGA CCTTCTGGAA GAATCCGGGT TCAACTTCGA TAGATGGAGT TTTTCGGAAG ATGAAAGGAT ACCTTGGAGA TTGCTTGAGA GAGAGCTCGA AATAGCCCAG TTCGAAAGGA CGGTTTCCGT TCTTTCAAAG GATCTGAAGT GGATATTCAA CTTTTTCAAG GATACGGTGG TAAAGTGA
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Protein sequence | MKKWELSQPD EKAVSEISQY FGLNEIASRI LVNRGFTTRE AVEAFLFINE SHQHNPFLFN DMEKAVETLL EARSRNELVL IHGDYDVDGI TSTVILKEFL EENGWRVDVY IPHRIEEGYG IQLENILTFK ENNVSCLVTV DCGITALDSV ALAKKFGMKV IITDHHEVNG DLPPADAIVN PKVPGENYPF RDLAGVGVTY KLVQAISEAI NYPHPERFLE LVALGTVADM VSLLDENRYF VKKGIELLSN TKRVGLKRLL ERLGLKNLTS HDISYKIAPR LNAAGRMGSA NDAFNLLIMN DPAKADGVVD RLMELNSIRR KTEWAIYKEA IEIIETNDLW KDPVIVVAKE NWHVGVIGIV AAKLANRYEK PVAVVSLDEK IAKGSIRSYN GYDIMNIFNE DILKIFEEIG GHSSAVGFSL KRDQLESFRE YIRNISLEGR EEKVIVDAEV RMEDIDDRFI EDIKKLMPFG QGNPEPVLLF KDVLIEKIHF FGEDGSNVFL HLKNGEKNLE VVGYNFKNLS SSLSTLPVTP TRGDVVVNLR PMGNGISYYL VSLDVKPILS VKNREVSHIL SRPKEEKTLI KVPYPSKTKL LLSIKEELQG KLAIVSLTNA TTQNILGCLS RYYTSKNLGF VNSTFSKEEE SDIVLFTLAG FLKKHRLDDF EVFVVNEFQD FLAHRDSELV KNFLDIVDKH PGKFIFVASI EHPELEEFLK KEKYDVVELR TDEPEKFLFS DQRNSFDLGS LVDAHSFAVV VSEKKLIPDL YRKIGKDAVV YYTSMDVEKK IKAISLMESG SARKAIITSN TDGLPTHIKG DIFFYDFPLS IYEIVDLLRR KSVVNLCYSS SDIEKRRYEL NKLFPDREKL KEIAITAMNL KDKEKLEKIL ESEYDLSSAT LRKIYLDLLE ESGFNFDRWS FSEDERIPWR LLERELEIAQ FERTVSVLSK DLKWIFNFFK DTVVK
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