| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1244 |
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| Symbol | |
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| ID | 5170765 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 1257777 |
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| End bp | 1259594 |
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| Gene Length | 1818 bp |
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| Protein Length | 605 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640563768 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_001244834 |
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| Protein GI | 148270374 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTAAGAA AGGCACTCCT TTTTGTAATC GACGTGGCTC TGACGTACTT TGCGGGTGTA
GTGGCGCTCT TTTCGAGGTT TGGTTTTGAC TTTCAGGAAA TGAGCCGTTA TGACGAATCC
GTGATCGTAT ACACCGCTGT CTCGGCTGTT GTCTACATTC TGAACGGAAA CTATTCCATC
GTGTGGGAAT ACGCTAATGC CAGAGACTTT CTCATTCTCA TAAGAGGAAG CGTTATCTCT
TATCTTTCCA ACCTTGCGTT TTTTTATGTT TACAGGGGAA TAGTTCTTCC CAGATCCGTG
GGGTTTGCCA CCTTTCTTGG TTCGATGGCC CTTCTTGTGC TGAGCAGGAT CACATGGCAG
TGGCTGACTG TGAACAGGCT AAGAAAAACC TCAGGGGAGA AGAGAATACT GGTCATAGGG
GCAGGAGATG CGGGAGTCTC TATTCTCGAA GAATTTGAGA AACACCCCCA TTTAGGAAAA
ATAGTGGCCT TCGTGGACGA TTCTCCCAGA AAGATCGGTC GAAAGGTGAG GGGAGTTCCG
GTTTTTGGAC CAATAGAGAA AACAATGGAA TTCGTGGAGA AAATGAACGT GGACGAAATC
GTGATAGCTA TACCTTCAGC TTCCAGAGCT GAGATGGAAC GAATTCTCAA AAGCATCGAT
TTGAAAAAGG TCAGAGTAAA GACCCTCCCC AGTGTGAGAG AGCTGATAGA AGGACGTGTC
AGGATCTCCC ATCTGAAGGA AATATCCATA GAAGATCTTC TGGGTCGCGA AGAAGTGAAG
GTGGATTTTC ATGAAATAGG AAAATTCTTG AAAGGGAAGA AAATTCTTGT GACCGGAGCA
GGAGGCAGTA TCGGTTCTGA GCTTTGCAAG CAAATAGCCA GGATGAATCC AGCGGAGATC
TTTCTTCTGG GCCACGGAGA AAACAGTATA TATCTCATAA ACGAGTTTCT CACCGAACAC
TTTCCGGAGG TGAAGAAAAA AAGGATCATA GCGGATGTTG CCGACAGAAA GATAATGGAA
CACTGGTTGA CCCAGCTGAG GCCGGACGTG ATCTTCCACG TGGCAGCACA CAAGCACGTT
CCTTTGATGG AGGAAAATCC GCTTGAGGCT TTCAGAGTGA ACGTTCTGGG AACGATGAAT
CTCGTGGAAC TCTCCGAAAG GCTCGGTGTT AAGTATTTTG TTTTCATCTC GACAGACAAA
GCGGTGAATC CCACTTCTGT GATGGGCCTC ACCAAGAGGA TAGCGGAACT CTACATCCTT
TCGAGAGAAA AAAACAGCAC GAATTTCTCG ATCGTGAGGT TTGGAAACGT TCTTGGAAGC
AGGGGAAGCG TAGTGGAAAA ATTTCGCCGT CAGATAGAAA AAGGTGGGCC TGTAACGGTG
ACGGATCCAC GAATGAAGCG CTACTTCATG TCCATACCTG AGGCCGTCTC CCTCATTCTC
CAGTCCCTTC TCTTCTCTTC CGGAAAGGAC CTCTTCATTC TCGACATGGG AGAGCAGATA
CCCATCCTGA AGCTTGTGGA AACCATGATC ATGCTCTCTG GGTACACCCC TTACCAGGAC
ATAAAGATAG TTTTCACCGG AATCAGGCCG GGGGAGAAGA TGTACGAAGA GTTGCTCTAC
CCTTACGAGA TGAAAGAGTT GACTCCACAC TCGAAAATCT TCAGAGTGAA GACATCCGTT
CTTCCAGGGA AAGAGAGCGT AGAACAGGCA ATCAACAGAA TGAAAGAAGC CTTCGAAAAC
AGCGACGTAA AAGGACTTCT CACCGAAATG AAAAAATTAG TCCCGGAGGC ACAAATAAAT
GTGGGAAGCG ATAATTAG
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| Protein sequence | MVRKALLFVI DVALTYFAGV VALFSRFGFD FQEMSRYDES VIVYTAVSAV VYILNGNYSI
VWEYANARDF LILIRGSVIS YLSNLAFFYV YRGIVLPRSV GFATFLGSMA LLVLSRITWQ
WLTVNRLRKT SGEKRILVIG AGDAGVSILE EFEKHPHLGK IVAFVDDSPR KIGRKVRGVP
VFGPIEKTME FVEKMNVDEI VIAIPSASRA EMERILKSID LKKVRVKTLP SVRELIEGRV
RISHLKEISI EDLLGREEVK VDFHEIGKFL KGKKILVTGA GGSIGSELCK QIARMNPAEI
FLLGHGENSI YLINEFLTEH FPEVKKKRII ADVADRKIME HWLTQLRPDV IFHVAAHKHV
PLMEENPLEA FRVNVLGTMN LVELSERLGV KYFVFISTDK AVNPTSVMGL TKRIAELYIL
SREKNSTNFS IVRFGNVLGS RGSVVEKFRR QIEKGGPVTV TDPRMKRYFM SIPEAVSLIL
QSLLFSSGKD LFILDMGEQI PILKLVETMI MLSGYTPYQD IKIVFTGIRP GEKMYEELLY
PYEMKELTPH SKIFRVKTSV LPGKESVEQA INRMKEAFEN SDVKGLLTEM KKLVPEAQIN
VGSDN
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