| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1233 |
|---|
| Symbol | |
|---|
| ID | 5170400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 1250176 |
|---|
| End bp | 1250922 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640563757 |
|---|
| Product | deoxyribose-phosphate aldolase |
|---|
| Protein accession | YP_001244823 |
|---|
| Protein GI | 148270363 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0274] Deoxyribose-phosphate aldolase |
|---|
| TIGRFAM ID | [TIGR00126] deoxyribose-phosphate aldolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGAGT ACAGAATTGA GGAGGCAATA GCGAGGTACA GAGAGTACTA CGAGTTCAAG
CCCGCCAGAG AAAGCGCGGG TATCGAAGAT GTGAGAAGTG CTATAGAGCA CACGAATCTG
AAACCGTTTG CCACACCAGA CGATATAAAA AAACTCTGTC TTGAAGCAAG GGAAAATCGT
TTCTATGGAG TCTGTGTGAA TCCGTGTTAT GTGAAACTGG CTCGTGAAGA ACTCGAAGGA
ACCGATGTGA AAGTCGTCAC CGTTGTTGGT TTTCCACTGG GAGCGAACGA AACTCGGACG
AAAGCCCATG AGGCGATTTT CGCTGTTGAG AGTGGAGCCG ATGAGATCGA TATGGTCATC
AACGTTGGCA TGCTCAAGGC AAAAGAGTGG GAGTACGTTT ACGAGGATAT AAGAAGTGTT
GTCGAATCGG TGAAAGGAAA AGTTGTGAAG GTGATCATCG AAACGTGCTA TCTGGATACG
GAAGAGAAGA TAGCGGCGTG TGTCATTTCC AAACTCGCTG GAGCTCATTT CGTGAAGACT
TCCACGGGAT TTGGAACAGG AGGGGCGACC GCAGAAGACG TTCATCTCAT GAAATGGATC
GTGGGAGATG AGATGGGTGT AAAAGCTTCC GGAGGGATCA GAACCTTCGA GGACGCTGTT
AAAATGATCA TGTACGGTGC TGATAGAATA GGAACGAGTT CGGGAGTTAA GATCGTTCAG
GGGGGAGAAG AGAGATATGG AGGTTGA
|
|---|
| Protein sequence | MIEYRIEEAI ARYREYYEFK PARESAGIED VRSAIEHTNL KPFATPDDIK KLCLEARENR
FYGVCVNPCY VKLAREELEG TDVKVVTVVG FPLGANETRT KAHEAIFAVE SGADEIDMVI
NVGMLKAKEW EYVYEDIRSV VESVKGKVVK VIIETCYLDT EEKIAACVIS KLAGAHFVKT
STGFGTGGAT AEDVHLMKWI VGDEMGVKAS GGIRTFEDAV KMIMYGADRI GTSSGVKIVQ
GGEERYGG
|
|---|
| |