| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1218 |
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| Symbol | |
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| ID | 5171113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 1238922 |
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| End bp | 1239659 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640563742 |
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| Product | tRNA pseudouridine synthase ACD |
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| Protein accession | YP_001244808 |
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| Protein GI | 148270348 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000567145 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGCGCG TGGCGGCAGT GATCGAGTAC GATGGAAGCA ATTTCTTCGG ATACCAGGGT
CAACCCGATG TCAGAACGGT TCAGGGAGTC ATAGAAGATG CCCTTGAAAG GATATTCAAA
CAGAGAATCT ACATCCAGGC GGCGGGAAGA ACGGACACCG GTGTTCATGC GAACGGTCAG
CTCATCGCTT TCAACTGTCC GAACGATCGA ATGACCACCG AGGACATAAG AAACGCCATG
AACGCGAATC TTCCGGATGA TGTTTATGTG AAAGAGGTTT TCGAAGTTCC TGTGAATTTT
CATCCCCGTT TCGATGTGAC AAAGAGAATC TATCACTACT TCATTCTGAC TTCGAGGCAG
AAGAACGTTT TCCTCAGAAA ATACGTCTGG TGGTTTCCCT ACGAGCTCGA TCTCGATGCG
ATGCGAAAAG CGGTGAAGTA TCTGGAGGGT ACCCATGACT TCACCTCTTT CAAGACGGGG
AGTGATGAAA GAGATCCTGT GCGGACCATA TACAGAATCA GAATTTTGAG GTTAAAAAAC
GATCTTGTTC TCATAAGAGT GGAGGGAAGG TCCTTTCTGA GAAGAATGGT TCGAAACATC
GTTGCCGCTC TTGTGAAAGT TGGTTTGAAG CAGTGGGAAC CTGAGAAGAT GAAGGAGGTG
CTCGAAGCAC GCGACAGGAG CGCGGCGGCT GGTACCGCAC CTGCACATGG CTTGTACTTT
TACAAAGTGC TGTTTTGA
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| Protein sequence | MKRVAAVIEY DGSNFFGYQG QPDVRTVQGV IEDALERIFK QRIYIQAAGR TDTGVHANGQ
LIAFNCPNDR MTTEDIRNAM NANLPDDVYV KEVFEVPVNF HPRFDVTKRI YHYFILTSRQ
KNVFLRKYVW WFPYELDLDA MRKAVKYLEG THDFTSFKTG SDERDPVRTI YRIRILRLKN
DLVLIRVEGR SFLRRMVRNI VAALVKVGLK QWEPEKMKEV LEARDRSAAA GTAPAHGLYF
YKVLF
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