| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1194 |
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| Symbol | |
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| ID | 5169959 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 1214799 |
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| End bp | 1215368 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640563713 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_001244784 |
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| Protein GI | 148270324 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.000462206 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGAACGAAA AAAAACTCGT TGAAGCCCTC AAAAGGAAAG AAGACTGGGC ATACGAGATT
CTATACAGAG AATTCGCTCC AAAAATAGGA AGTATAGCAA AGAGCTTTTT GAACACCGAC
GATGTGGATG ATGTTGTTCA GGATGTTTTT TTGAGGATTT TCAAAGGGAT AAAGAAATTC
AGAGGCGATT CGAAGCTCTC TACGTGGATC TACAGGATAG CCGTGAATGT CTGTAAGGAC
TATCTTCAGA AGTACAAGAA GAGAAACGAG TTTTTGACGG ATTTCCAGGA GAAAGACAAC
GAAGAGGAAA TCTACATCCA GCCGGAAGCG AAAGAGGATG TGTTCGATGA AGTGCTTCGA
TCGATCACTG CTGAGAGGGT TCAAAAGGCT CTGGAAAAGC TCTCACCGGA GGACAGGCTG
CTCATAAAAC TGAGGGATAT AGACGGGTTG AGCTATGAAG AAATAGCGTC CGTTTTGCAA
AAACCTGTTG GAACTGTGAA AAGCCGTCTT CACTACGCAA GAAAGAGGCT GGGAAACTTG
CTGAAAGAGG GTGGAACTGT TGAAAGATGA
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| Protein sequence | MNEKKLVEAL KRKEDWAYEI LYREFAPKIG SIAKSFLNTD DVDDVVQDVF LRIFKGIKKF
RGDSKLSTWI YRIAVNVCKD YLQKYKKRNE FLTDFQEKDN EEEIYIQPEA KEDVFDEVLR
SITAERVQKA LEKLSPEDRL LIKLRDIDGL SYEEIASVLQ KPVGTVKSRL HYARKRLGNL
LKEGGTVER
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