Gene Tpet_1185 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1185 
Symbol 
ID5170561 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand+ 
Start bp1206893 
End bp1207429 
Gene Length537 bp 
Protein Length178 aa 
Translation table11 
GC content41% 
IMG OID640563704 
Productsigma 54 modulation protein/ribosomal protein S30EA 
Protein accessionYP_001244775 
Protein GI148270315 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1544] Ribosome-associated protein Y (PSrp-1) 
TIGRFAM ID[TIGR00741] ribosomal subunit interface protein 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00855274 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGTACA GGATAACGGG AAAGGGTGTA GAGATTTCCG AAGCCATCAA GAACTATCTG 
GAAAAAAGGC TCGATAAAGT TGACAGAGTG ATCTACGATG ATGAACTCGT CTCCTTTGAC 
GTGAGAATAG AAAAAGATGG AAAGAATCAA TACGTGGTTA AGTTCAATAT GAATCTGAAA 
GGGAACATCA TCAATGTGGA AGAAAGGCAT CCGGACATTT ACACCGCGAT AGACTTCGCC 
TCGGATGCTC TGGAAAAACA GGTGAAAAAA CTGAAAGAAA GGCTGAAGAA CCACTCCCAT 
AGAAAGTCTA TACCCACTGA AACACCTCTT GAAGAACACG GTGAATTTTC TCCATCCGAT 
AAGATTTCTT CGATAAAAAG AGTTTCTCTT CTCAACCTCG ATCTCGATGA AGCAGTCATG 
CAGATGGATG AGTTGAACCA CCGATTCCTC GTTTTCAGAA ACGTCAACAC TGGTGAAATA 
AATCTTCTCT ACAGAGACGA AAACGGAAAC ATTCATCTCA TTGAGATGGC AGAGTAA
 
Protein sequence
MEYRITGKGV EISEAIKNYL EKRLDKVDRV IYDDELVSFD VRIEKDGKNQ YVVKFNMNLK 
GNIINVEERH PDIYTAIDFA SDALEKQVKK LKERLKNHSH RKSIPTETPL EEHGEFSPSD 
KISSIKRVSL LNLDLDEAVM QMDELNHRFL VFRNVNTGEI NLLYRDENGN IHLIEMAE