Gene Tpet_1137 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1137 
Symbol 
ID5170092 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp1159180 
End bp1160418 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content44% 
IMG OID640563656 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_001244727 
Protein GI148270267 
COG category[T] Signal transduction mechanisms 
COG ID[COG5002] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000397625 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTATTT TCCTGTTTGT CGTAGTAGCT GTTCTATTCG TCCTGCTCTT TTTGGTGTTC 
AGGAAGCGCC TATCTGAGTA CAGAATCTTC ATCGAAAAGC TGTCAGATAT GCTGGGGGAA
AAGGACGTTC CCCCGCTTTA TCTTTTCGAG AGACTGAAAA AGTACGTAGA CAATCTGAAA
GAAACAATTT CGCGTGTTGA GGTGAGCAGA GACAACTTCC TCACGATTTT GAACAGCCTC
AGTGAACCCA TATTCATTCT GGATCGAGAG GGGAAGATCA CGTTTTTGAA CGAAATTGCC
CGTGAACTTG TGCAGGGCAG GATCAATCCC GAAGGAAGGC CTTATTACGA AATATTTGAA
GATTACTACA TAAGCGAAAT GGTGGAAGAG ACCATTAAGA GTGAAGAGCC ACAGGAAGGA
ACTCTTGTTA CCTACGTTGG TAACGAGAAG AAATATTTCC ACGTGAAGGT AATACCTGTC
GAACTGAAAA GTGGTGATAA GATCTTTGTC ATTCTCTTCC ACGATGTTAC TAAAGAAAGA
AAGCTCGATG AGATGAGAAG GGAATTCATA GCAACAGTTT CACACGAACT TAGAACCCCT
CTCACTTCCA TCCACGGTTA TGCGGAGACG CTCCTTGAAG ATGATCTGGA GGACAAAGAG
CTGGTTAAGA GATTTCTGAA AATCATAGAA GAAGAATCTG CCCGTATGAC ACGTCTCATC
AACGATCTTC TCGATCTCGA GAAAATGGAA GAAAGTGAAG TCAATTTTGA AATGAAAGAT
GTGGATCTGT GTGAAGTGAT AGAATACGTT TACAAAATCA TCCAGCCTAT AGCCGAAGAA
AATGAAGTGG ACCTCGTTGT TGAGTGTGAG GATGTTGTGG TCAGGGGAAA CAAAGAAAGG
CTGATCCAGA TGCTCCTGAA TCTCGTGGAC AACGCTGTCA AGTACACATC TTTGAAGGAA
AAGGGAGAGA AAAAGGTCTG GGTGAGGGCC TACGATACAC CGGACTGGGT GGTCTTGGAG
GTAGAAGACA CGGGACCTGG AATACCCAAA GAAGCCCAGA GTAGAATCTT TGAAAAGTTC
TACAGGGTGG ATAAAGCGCG TTCCAGAAAG ATGGGTGGAA CAGGCTTGGG TCTCACGATA
GTGAAAACGA TCGTCGACAA ACACGGAGGA AGGATAGAGG TTGAGAGTGA GATCAACCAG
GGAACGGTGA TGAGAGTTTT CCTGCCGAAA AGAGGGTGA
 
Protein sequence
MSIFLFVVVA VLFVLLFLVF RKRLSEYRIF IEKLSDMLGE KDVPPLYLFE RLKKYVDNLK 
ETISRVEVSR DNFLTILNSL SEPIFILDRE GKITFLNEIA RELVQGRINP EGRPYYEIFE
DYYISEMVEE TIKSEEPQEG TLVTYVGNEK KYFHVKVIPV ELKSGDKIFV ILFHDVTKER
KLDEMRREFI ATVSHELRTP LTSIHGYAET LLEDDLEDKE LVKRFLKIIE EESARMTRLI
NDLLDLEKME ESEVNFEMKD VDLCEVIEYV YKIIQPIAEE NEVDLVVECE DVVVRGNKER
LIQMLLNLVD NAVKYTSLKE KGEKKVWVRA YDTPDWVVLE VEDTGPGIPK EAQSRIFEKF
YRVDKARSRK MGGTGLGLTI VKTIVDKHGG RIEVESEINQ GTVMRVFLPK RG