| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1137 |
|---|
| Symbol | |
|---|
| ID | 5170092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 1159180 |
|---|
| End bp | 1160418 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640563656 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001244727 |
|---|
| Protein GI | 148270267 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5002] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000397625 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATTT TCCTGTTTGT CGTAGTAGCT GTTCTATTCG TCCTGCTCTT TTTGGTGTTC
AGGAAGCGCC TATCTGAGTA CAGAATCTTC ATCGAAAAGC TGTCAGATAT GCTGGGGGAA
AAGGACGTTC CCCCGCTTTA TCTTTTCGAG AGACTGAAAA AGTACGTAGA CAATCTGAAA
GAAACAATTT CGCGTGTTGA GGTGAGCAGA GACAACTTCC TCACGATTTT GAACAGCCTC
AGTGAACCCA TATTCATTCT GGATCGAGAG GGGAAGATCA CGTTTTTGAA CGAAATTGCC
CGTGAACTTG TGCAGGGCAG GATCAATCCC GAAGGAAGGC CTTATTACGA AATATTTGAA
GATTACTACA TAAGCGAAAT GGTGGAAGAG ACCATTAAGA GTGAAGAGCC ACAGGAAGGA
ACTCTTGTTA CCTACGTTGG TAACGAGAAG AAATATTTCC ACGTGAAGGT AATACCTGTC
GAACTGAAAA GTGGTGATAA GATCTTTGTC ATTCTCTTCC ACGATGTTAC TAAAGAAAGA
AAGCTCGATG AGATGAGAAG GGAATTCATA GCAACAGTTT CACACGAACT TAGAACCCCT
CTCACTTCCA TCCACGGTTA TGCGGAGACG CTCCTTGAAG ATGATCTGGA GGACAAAGAG
CTGGTTAAGA GATTTCTGAA AATCATAGAA GAAGAATCTG CCCGTATGAC ACGTCTCATC
AACGATCTTC TCGATCTCGA GAAAATGGAA GAAAGTGAAG TCAATTTTGA AATGAAAGAT
GTGGATCTGT GTGAAGTGAT AGAATACGTT TACAAAATCA TCCAGCCTAT AGCCGAAGAA
AATGAAGTGG ACCTCGTTGT TGAGTGTGAG GATGTTGTGG TCAGGGGAAA CAAAGAAAGG
CTGATCCAGA TGCTCCTGAA TCTCGTGGAC AACGCTGTCA AGTACACATC TTTGAAGGAA
AAGGGAGAGA AAAAGGTCTG GGTGAGGGCC TACGATACAC CGGACTGGGT GGTCTTGGAG
GTAGAAGACA CGGGACCTGG AATACCCAAA GAAGCCCAGA GTAGAATCTT TGAAAAGTTC
TACAGGGTGG ATAAAGCGCG TTCCAGAAAG ATGGGTGGAA CAGGCTTGGG TCTCACGATA
GTGAAAACGA TCGTCGACAA ACACGGAGGA AGGATAGAGG TTGAGAGTGA GATCAACCAG
GGAACGGTGA TGAGAGTTTT CCTGCCGAAA AGAGGGTGA
|
|---|
| Protein sequence | MSIFLFVVVA VLFVLLFLVF RKRLSEYRIF IEKLSDMLGE KDVPPLYLFE RLKKYVDNLK
ETISRVEVSR DNFLTILNSL SEPIFILDRE GKITFLNEIA RELVQGRINP EGRPYYEIFE
DYYISEMVEE TIKSEEPQEG TLVTYVGNEK KYFHVKVIPV ELKSGDKIFV ILFHDVTKER
KLDEMRREFI ATVSHELRTP LTSIHGYAET LLEDDLEDKE LVKRFLKIIE EESARMTRLI
NDLLDLEKME ESEVNFEMKD VDLCEVIEYV YKIIQPIAEE NEVDLVVECE DVVVRGNKER
LIQMLLNLVD NAVKYTSLKE KGEKKVWVRA YDTPDWVVLE VEDTGPGIPK EAQSRIFEKF
YRVDKARSRK MGGTGLGLTI VKTIVDKHGG RIEVESEINQ GTVMRVFLPK RG
|
|---|
| |