Gene Tpet_1130 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1130 
Symbol 
ID5169986 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp1154288 
End bp1154782 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content47% 
IMG OID640563649 
Productpeptide deformylase 
Protein accessionYP_001244720 
Protein GI148270260 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0242] N-formylmethionyl-tRNA deformylase 
TIGRFAM ID[TIGR00079] peptide deformylase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000143546 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACAGAA TAAGAGTCTT TGGGGATCCT GTTTTGAGAA AGAGGGCAAA ACCCGTCACG 
AAGTTCGACG ACAACCTGGA AAAGACCATA GAGAGAATGA TAGAGACAAT GTATCACTAC
GACGGTGTGG GGCTTGCAGC GCCACAGGTT GGAATATCTC AGAGGTTCTT CGTCATGGAC
GTTGGAAATG GCCCGGTTGC CGTGATAAAC CCTGAGATCC TTGAAATCGA TCCCGAAACC
GAAGTGGCAG AGGAAGGATG TCTCAGCTTT CCCGAGATCT TCGTCGAGAT AGAAAGGAGC
AAAAGAATAA AGGTCAGATA CCAGAACACG AAGGGAGAAT ACGTGGAAGA GGTGCTGGAA
GGTTACGCTG CAAGGGTTTT TCAGCACGAG TTCGATCATC TGAACGGAGT TTTGATCATC
GATCGAATCA GTCCAGCGAA GCGCCTTTTG CTCAGAAAGA AACTCATGGA CATAGCAAGA
ACCGTTAAGA GATGA
 
Protein sequence
MYRIRVFGDP VLRKRAKPVT KFDDNLEKTI ERMIETMYHY DGVGLAAPQV GISQRFFVMD 
VGNGPVAVIN PEILEIDPET EVAEEGCLSF PEIFVEIERS KRIKVRYQNT KGEYVEEVLE
GYAARVFQHE FDHLNGVLII DRISPAKRLL LRKKLMDIAR TVKR