Gene Tpet_1108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1108 
Symbol 
ID5169937 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp1137201 
End bp1138052 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content48% 
IMG OID640563625 
ProductHflC protein 
Protein accessionYP_001244698 
Protein GI148270238 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01932] HflC protein 


Plasmid Coverage information

Num covering plasmid clones45 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATCT GGATGATTTC TCTTCTGATC ATTCTGATCG TGGTGGGTGC GATCCTTCTT 
TTCTCTTCTT TCTACGTCCT GGATCAGACA CAGCAAGCGG TGGTTCTGAG GTTCGGAAAG
ATCGTCGCGG TGGAAACAGA ACCTGGGCTT CACTTCAAGC AGCCGTTCGT TGATAATGTG
GTGAGATTCG ATAAAAGAAT CCTCCTCTAC GATATAGAAC CAGAAAAGAT CATAGCCGCC
GACAAGAAAA CGCTCGTGAT AGACACGTAC GTTCTCTGGA GGATAAAAGA TGCGGAAGCG
TTCATAAAAT CACTGAAGAG CGTGAAGCTC GCTCTTCCAA GAATCGACGA TGTGGTTTAC
TCACACGTGA GGAACATCTT CGCAAAAGCG AACTTCGACG AGATCATCTC CGAGAAGAGA
GAAGACCTTT TGAGGGAAGT CACGGCTCTT TCAAGAGAAG ATCTGAAGGA CTTCGGCATA
GAAGTGGTCG ATGTGAGGGT GAAGCACGCC GACCTCCCCG CTGAGAACGA AAAGGCCGTG
TACGAAAGAA TGAAAGCGGA AAGATACAGC ATCGCTGCAC AGATCAGGGC TGAAGGTGAG
AAAGAGGCAA GAAAGATACG TGCGGAAGCC GACAAAACAG CGAAGGTTCT GATCGCGGAA
GCTCAAAGCA AAGCAGAGCA AATCAAGGGA ACCGGAGAAG CAAGCGCGGT GAAGATCTAC
GCGGAGGTGT TTTCAAAAGA CAAGGACTTC TACGAATTCT GGAGAACGAT GGAGGTTTAC
AGATCCATCG AGAAAGGAAT TCTCATAATT GGAGACGAAC TCGATGCACT GAAATACCTC
AAAACGAAGT AA
 
Protein sequence
MKIWMISLLI ILIVVGAILL FSSFYVLDQT QQAVVLRFGK IVAVETEPGL HFKQPFVDNV 
VRFDKRILLY DIEPEKIIAA DKKTLVIDTY VLWRIKDAEA FIKSLKSVKL ALPRIDDVVY
SHVRNIFAKA NFDEIISEKR EDLLREVTAL SREDLKDFGI EVVDVRVKHA DLPAENEKAV
YERMKAERYS IAAQIRAEGE KEARKIRAEA DKTAKVLIAE AQSKAEQIKG TGEASAVKIY
AEVFSKDKDF YEFWRTMEVY RSIEKGILII GDELDALKYL KTK