Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1099 |
Symbol | |
ID | 5169967 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | - |
Start bp | 1128498 |
End bp | 1129250 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640563616 |
Product | CRISPR-associated Cas family protein |
Protein accession | YP_001244689 |
Protein GI | 148270229 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1583] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
TIGRFAM ID | [TIGR01877] CRISPR-associated endoribonuclease Cas6 |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.000187286 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGATTGA AAGTTTCTTT TCAGGCGATG GAAAGCACTA TTCCGTTGAA TTACAACTAT TTTCTTTCTT CTTTCATCTA CAAGAGATTG GCTTCACAGA ATGAAAACTT TGCCAGATTC CTTCACGAGA AGGGTTATGG GAAGAGGTTC AAGTTTTTCA CTTTTTCACA ACTTTTCTTT GAAAATTCCA GAGTCAGCGG TGAGAAAATA TTAATATTTC CAGGAAAGGG GTGGTGGTAC ATCTCATCAC CAGTTATTGA GTTCGTCAGG TACATGTTTT CTTCTCTCTC CGAAGATCCC GTGATCAGGG TGGAAAAAAC AGAGTTCATC GTGAAATCCA TTGACATCGA AAATTCTCTT CCTGATCAGT CGGAGTACCA CTTTGTCATG CTGTCACCAC TTGTGGTCAG TGTACCAGAA GAAAACAACG GAAAGCTTTA CCACAGGTAT CTTCATCCGG AAGAAGAAGA GTTCTACGAA GTTTTCAGAA AGAATCTTGT GAAGAAGTAC AGGGCTTTTT ACGGAAAAGA ACCAGAAGGC ACTGTTGAAG TCATTCCCGA TTGGGATTAC ATCAAATCAC GTCAGCGGAT AACCAAAAGG ATCAAATTGA AAAACGCGTT CGTCAGAGCT GTGGTTTTCC CGTTCAAAAT CAGGGGCGAG AAAAAACTTG TAGAGATCGG CTATGAAGCG GGTTTTGGAG AGAAAAATAG CATGGGATTC GGAATGGTAG CCTTGAAAAA ATATGAGAGG TGA
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Protein sequence | MRLKVSFQAM ESTIPLNYNY FLSSFIYKRL ASQNENFARF LHEKGYGKRF KFFTFSQLFF ENSRVSGEKI LIFPGKGWWY ISSPVIEFVR YMFSSLSEDP VIRVEKTEFI VKSIDIENSL PDQSEYHFVM LSPLVVSVPE ENNGKLYHRY LHPEEEEFYE VFRKNLVKKY RAFYGKEPEG TVEVIPDWDY IKSRQRITKR IKLKNAFVRA VVFPFKIRGE KKLVEIGYEA GFGEKNSMGF GMVALKKYER
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