Gene Tpet_1096 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_1096 
Symbol 
ID5171735 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand- 
Start bp1124206 
End bp1124628 
Gene Length423 bp 
Protein Length140 aa 
Translation table11 
GC content41% 
IMG OID640563613 
ProductCRISPR-associated Csm2 family protein 
Protein accessionYP_001244686 
Protein GI148270226 
COG category[L] Replication, recombination and repair 
COG ID[COG1421] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR01870] CRISPR-associated protein, Csm2 family 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCAGTTT CTCAGGGTGT TTCTCTCAAA GAAGATTTGA AGGACCTTGT GAGAAAGGCA 
GAGGAAATCG GAAGGGAACT TTCTGGAAAG CTGAAGACAA ACCAGCTCAG AAAGTTTCAT 
GGTCACTTAA CCAAAATCTG GAGCAACTAC ATCTACAAAA AGAAGGACTA CAGGGATAAC 
CCGGAGAAGT TCAACGAAGA GATCCTTAAC GAGCTTCACT TCATGAAGAT ATTTCTCGCA 
TATCAGGTTG GAAGGGATAT CGAAGGTATC AGTGAATTGA AGGAGATACT TGAACCTCTC 
ATAGACGAGA TAAAGACTCC TGACGAGTTT GAGAAATTCA AAAAGTTCTA CGATGCAATC 
CTTGCGTATC ACAAATTCCA TTCTGAATCC GAAAAAAGCA ACAGAAGGAC AGCCAGAAGA 
TAA
 
Protein sequence
MAVSQGVSLK EDLKDLVRKA EEIGRELSGK LKTNQLRKFH GHLTKIWSNY IYKKKDYRDN 
PEKFNEEILN ELHFMKIFLA YQVGRDIEGI SELKEILEPL IDEIKTPDEF EKFKKFYDAI 
LAYHKFHSES EKSNRRTARR