| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1093 |
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| Symbol | |
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| ID | 5171398 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 1121438 |
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| End bp | 1122577 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640563610 |
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| Product | CRISPR-associated RAMP Csm5 family protein |
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| Protein accession | YP_001244683 |
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| Protein GI | 148270223 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1332] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
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| TIGRFAM ID | [TIGR01899] CRISPR-associated RAMP protein, Csm5 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGGTGA CTCTCAAAAC ACTGACCCCC CTTCACATAG GAAGCGGTGA AAAATATCCT
CCATGCAACC TTGTTGTTCT AAAAGAAGAA GACAACAAAA AAACAGCTGT GAGGCTTAAT
ACAAGAAAAT TTCTTGAAGT TTTGAGGAAA CGTCCTCAAA TCACAAAGGA GCTTTCTAAA
ACTCTCACTT TGAAGGAAGT AGAAAACGTG GAAGATGGTG TTTTCTATGA AGTAAGCCTC
TACTCAGATT TCTCAAGTGG AAAAAGAAAT CCGGAGATTC CTGAAGTTGT TCACCATCCC
GACGGAAGCG TTTATATCCC AGGAAGTTCG TTGAAGGGCG CTGTAAAACT TGCACTCACC
TGGCACGTTT TGAGGAACAA CAGGAATCTT CTTGAAGAAT TCCGCAAGAG GGTACAGGAA
GATATTAAAA ATCATAAAAA AAATCATAAA AGAACATTCT ACGGGACCAA TGAATTTCTG
AATGGATTGT TCAGATTCGA TCCAAGAGGG ATCAACACCG ACTACTTCCG CTTTCTCAGA
ATTTCTGATT CTCAAACACT GAAAACTCAG GTGGTTGTGC ACGATGTCGG GATCTTCTAC
GTAGCTCGTC CCAACAGTCA CCCCAAAACT TTCTCTCTGG AGTTTGTTCC TATCAACAGA
GATTTCGTCT TTGATGTGAG GTTTGTGAAA GAAGAATACG ATTACTTTCT CACACACGTG
AGAAAACACT ACAGAGTAGA ACTTCCCAAA AGTATTGAAG AGATCTTTTC GATCGTGAAC
GAGTTCTACT CTGAAGTTTT CAAATTCGAA AGAGAACGCT TTGAAAAGGC AAAGGAGAAT
TTTAAAGGTC TTGACACCAG CAAGATCGAA GAGAGATTCC AAAAGATAGA GAAAGTGCTT
CAAAACAAGA AGTACGTACT CATACACGTA GGATACGGAG GAGGACTCAT GGCAAATTCG
CTCTTCATTC TCCTTGACGA GGAAACAAGA AAACAGGTGA GAAACATTAT AAAGGATCAT
AAAGATGACG AAGCTCCTCT CACGAGGAGA TACCTCGTTC AGAGTGAAAA CAACAGTTAC
AGAGTGATAT CTCCGATAGG ATGGTGCGCG CTGTGGTTGG AAGATTCCCA ATCTACGTAG
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| Protein sequence | MKVTLKTLTP LHIGSGEKYP PCNLVVLKEE DNKKTAVRLN TRKFLEVLRK RPQITKELSK
TLTLKEVENV EDGVFYEVSL YSDFSSGKRN PEIPEVVHHP DGSVYIPGSS LKGAVKLALT
WHVLRNNRNL LEEFRKRVQE DIKNHKKNHK RTFYGTNEFL NGLFRFDPRG INTDYFRFLR
ISDSQTLKTQ VVVHDVGIFY VARPNSHPKT FSLEFVPINR DFVFDVRFVK EEYDYFLTHV
RKHYRVELPK SIEEIFSIVN EFYSEVFKFE RERFEKAKEN FKGLDTSKIE ERFQKIEKVL
QNKKYVLIHV GYGGGLMANS LFILLDEETR KQVRNIIKDH KDDEAPLTRR YLVQSENNSY
RVISPIGWCA LWLEDSQST
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