| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1088 |
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| Symbol | |
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| ID | 5171005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 1117624 |
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| End bp | 1118349 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 640563605 |
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| Product | CRISPR-associated Cas family protein |
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| Protein accession | YP_001244678 |
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| Protein GI | 148270218 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1583] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
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| TIGRFAM ID | [TIGR01877] CRISPR-associated endoribonuclease Cas6 |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGGATAT TCTTCAGGAT CTTTTTTAAA GATAACTCCC AAGAGGTTTT TCCGGTTGAC
TACAGGCGTA TTTTCATGTC CGTGTTGAAG CGGGTCTATG AAGGAACTCC GTTTGAGGAA
ATAGTGCTGT CCCATGATAG AATTCCAAAG CCGTATGTTT TCAGCGTTGG ATTCAGGAGA
ATAAAGGAAA TCTCAGGAGA CTCCATTATG TTTGAGTCTC CTGTTTTTTT TAATTTCTCT
TCGTCTATTC CACAGATGAT AGGCTATTTG TACAACCATA TTGATCGTAT CAAATCATTC
TTCAAAGGCA CGGAAATATT AGTGGATCTT CCTATACCCA AGATGATAAC TTCCGAGAAG
GTAAATTTTA AGATACTTGG AAGTGCTGTT CTAACCCGAT CAGAAAAAGA TAGGTACTAT
TTAAATCCCG AAGATGATGA TTTTGAAGAG GCTTTAAACC ACTCCCTGAA AGTTCGTCTT
GATCTTTTGA AAGACATTTT CGAAAAATTT GGTGTTAAAG CACCTGGCTT CAAACCTGTG
AACATTGTGA GCAAAGATCT CAAGAAAGTT CCTGTCAAGC ATTATGGAGG AGTTCTAGAG
GCATTCTCTG GCACGATAAC GCTCTCTGGA AACCTTAATA TCTTGAATTT TCTCTACGAA
AACGGGTTAG GAGTGAGGAC AGGTCAGGGA TTTGGAATGC TCAAGGTGGT GAAAGAGTGG
CGATAG
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| Protein sequence | MRIFFRIFFK DNSQEVFPVD YRRIFMSVLK RVYEGTPFEE IVLSHDRIPK PYVFSVGFRR
IKEISGDSIM FESPVFFNFS SSIPQMIGYL YNHIDRIKSF FKGTEILVDL PIPKMITSEK
VNFKILGSAV LTRSEKDRYY LNPEDDDFEE ALNHSLKVRL DLLKDIFEKF GVKAPGFKPV
NIVSKDLKKV PVKHYGGVLE AFSGTITLSG NLNILNFLYE NGLGVRTGQG FGMLKVVKEW
R
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