Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_1084 |
Symbol | |
ID | 5171159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | - |
Start bp | 1112028 |
End bp | 1114319 |
Gene Length | 2292 bp |
Protein Length | 763 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640563601 |
Product | CRISPR-associated helicase Cas3 |
Protein accession | YP_001244674 |
Protein GI | 148270214 |
COG category | [R] General function prediction only |
COG ID | [COG1203] Predicted helicases |
TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 [TIGR01596] CRISPR-associated endonuclease Cas3-HD |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCCAAAA TTCTTGCCAA GAGCAACGGT GTTACTCTCA GAGAGCACGT ACTGGATTTA TTGGAAGTAC TGGAGAATCT TCAGATAGAT TCTGGAGTAA GAGAACTTGC TGGGAAAGCT ATCCTTTATC ATGATTTGGG TAAAGTAATA TACGCGTTTC AAAAAAAAGT TGGAGGAGAT GTCCCGGAAG ATGGTATTCC CGACATTCCG CACAGCTTTC TGAGTATAGC ATTTATCCCG GAGAATACTC TCAGAGAACT CGGTGAAGGA CTTTCTCGCA TTTTTCTTTC AGCGGTTCTT TACCATCATT GGCGAGAAAC CTATCTTGAC TATCTGTTTG GAAGAAAAAA AGAAAGTGTT TGTAAAGCTT ACGAAAGACT TCTTGAAGTA GGTGATGAGA TAGTTTGGCT TCTCAGAGAA GAAATGGGAG ATCTCTGTGA AATTGAATTG AACAAACCGC TGTGTGAATA CTTATCACAT AACTCGATAA TTGACAGTGG CTTAGTATTC CCTCCTCATT TGATTTCTCT GCTTCCGAGT ATCATCCTTA AAGAACTGAA TATAAGAGAT GAAAATTACA AGCGTTACAT AATCACCTCT GGGACAGTCA TGCGAGCCGA TAGATTCGCA TCTTACGTGG AAACGGCTGG AAATAAGGAG CTTCTCAAGA AAGCAGATAA AAGACTGGAA AGAGATCAGC TTGAGACTGT TCGAAGATAT CTGGAGAGAA TATCCAACAA AGTATGGCAA CTGGATCTTC TGAAAGATTG TCGAGGAGAA AATATTGTAC TTGTGGCGCC GACCGGAGCC GGAAAGACAG AATTTGCCCT GATGTGGAGC AAAGGAAAAA CCTTGTTCAC TCTTCCTCTT CAGAGCGCAA CGAACATGAT GTACGAAAGA GTTAAGAATT ATTTTGGTGA AGAAAACGTC GGTCTTCTAC ATTCCGATGC TGCTGTTTAT CTGTTTTTCT CCAGTTTTCT GAAAAACAAC TTTGAGGACA GAGAAGGAGA AGTGCTTCAG ATAGTGGAAC AATCAAGATT CTTTTCTCAT CCTTTCGTAA TATCGACGGG GGATCAAGTC TTTCCTTCTG CTTTGAAATA TCCGGGATAC GAGATGATCT ATTCAATCCT GGCTAATTCC TATCTTGTGA TAGACGAAAT ACAGGCCTAT TCTCCCGAAG CTGCAGCGAT AATTGTCAAG ACAGCTGAGG ATGTGAAACA ACTCGGAGGA CATTTTTTGA TAATGACAGC TACACTGCCT GGATTCATCA GGGATGAGAT CTTAAAAAGA GCCGAGCTAG AGGAAAAGAA TATAAAAGAT GTTTACGAAG ACATTCCTCA GGGAAGATTA CTACGGAATT TGGTTAAAGT TGAAAAAAGC TTGGATCCCG TGGAAAAAGC TGTTGAATTT TTCAAAAAAG GATGTAGGGT TTTGATAGTA AGAAACACAG TGCGGAATGC GATTGAAACT TATCGGCAAC TTGTAGAGAA ACTGGGAAAA GAGGATGTTC TACTGATACA TTCCCGGATG ACTCTGGAGG ATCGAAGAAG AATAGAGGAG ATTTTGGAAA GTTACCGCCC AGGAGCGAAG GGAAGAAACA TTATTCTCGT ATCAACACAG GTTGTGGAGG CTTCAATGGA CATTGATTTT GATATTCTGC TTACAGATAT AGCACCAGCG GATTCTCTGG TGCAGAGGAT GGGAAGAATC TTCAGAAAAA GGGAGTGGAC TGAAGAATTT CCGAATACTT TCATATACGC TGATAGCAAT GAGAAAAAGC GAAAGGAGCT TATCGCCGGG GTTTACAGTG AAGATGTTGT ATCTGCAACT TTGAACGCGT TAGAAGGCAT GTTTGACATA GAAAAACCAT TTAAGCTGGA TGAGCTATCA AAAAGAAAAT GGGTGGAAGA GACCTATCAG GCACTTTCTC AAGGAAGCAA CTATTTAAAG AAATTTCGGG AGACTCTTGA TGTTCTCGAT AGCGGTTATT CCTCAGAAAA GAAGCATGAA GCCCACAGGA TTTTCAGAAG GGTAGTATCC ATGAGCATTG TTCCGGAAAA TTTGAAAGAA GATCTTAAGC GGGAGCTGAA GAGTGTATCG GATTACTTTG ACTTCAGGCG AGTTACTGCA AAATATCTTG TTGATGTTCC GCTCCACCAC ATAAAAAGTG GAGCTTTAGA GCCTTTGGAG GTAGAATCCG AGAATGAACA AGTATTGAAA TGGGCAAGCG CGCTTTATGT GTTGAAGGGT AGCAGGTACG AAAAAGGTCT GGGAATTTTC CTGGAGGAAT GA
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Protein sequence | MSKILAKSNG VTLREHVLDL LEVLENLQID SGVRELAGKA ILYHDLGKVI YAFQKKVGGD VPEDGIPDIP HSFLSIAFIP ENTLRELGEG LSRIFLSAVL YHHWRETYLD YLFGRKKESV CKAYERLLEV GDEIVWLLRE EMGDLCEIEL NKPLCEYLSH NSIIDSGLVF PPHLISLLPS IILKELNIRD ENYKRYIITS GTVMRADRFA SYVETAGNKE LLKKADKRLE RDQLETVRRY LERISNKVWQ LDLLKDCRGE NIVLVAPTGA GKTEFALMWS KGKTLFTLPL QSATNMMYER VKNYFGEENV GLLHSDAAVY LFFSSFLKNN FEDREGEVLQ IVEQSRFFSH PFVISTGDQV FPSALKYPGY EMIYSILANS YLVIDEIQAY SPEAAAIIVK TAEDVKQLGG HFLIMTATLP GFIRDEILKR AELEEKNIKD VYEDIPQGRL LRNLVKVEKS LDPVEKAVEF FKKGCRVLIV RNTVRNAIET YRQLVEKLGK EDVLLIHSRM TLEDRRRIEE ILESYRPGAK GRNIILVSTQ VVEASMDIDF DILLTDIAPA DSLVQRMGRI FRKREWTEEF PNTFIYADSN EKKRKELIAG VYSEDVVSAT LNALEGMFDI EKPFKLDELS KRKWVEETYQ ALSQGSNYLK KFRETLDVLD SGYSSEKKHE AHRIFRRVVS MSIVPENLKE DLKRELKSVS DYFDFRRVTA KYLVDVPLHH IKSGALEPLE VESENEQVLK WASALYVLKG SRYEKGLGIF LEE
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