| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_1015 |
|---|
| Symbol | |
|---|
| ID | 5171776 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 1043017 |
|---|
| End bp | 1045398 |
|---|
| Gene Length | 2382 bp |
|---|
| Protein Length | 793 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640563533 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_001244609 |
|---|
| Protein GI | 148270149 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGGTAA CTCCCCTCAT GGAACAGTAC CTGAGAATAA AAGAACAGTA CAAAGATTCC
ATTCTGCTGT TTCGTCTGGG AGATTTCTAC GAGGCGTTTT TCGAAGACGC GAAGATCGTT
TCAAAGGTTT TGAACATAGT CCTCACGAGA AGACAGGATG CCCCCATGGC AGGTATTCCA
TACCACGCGT TGAACTCCTA CCTGAAAAAG CTCGTCGAAG CGGGATACAA GGTGGCGATC
TGTGACCAGA TGGAGGAACC TTCGAAGTCG AAGAAGCTGA TCAGAAGGGA AGTCACACGC
GTTGTCACCC CTGGGTCCAT CTTAGAAGAT GAGTTTCTCA GTGAAACGAA CAACTACATG
GCCGTTGTCT CAGAAGAGAA AGGACAGTAC TGTACGATCT TCTGCGATGT CTCGACAGGT
GAGGTCCTGG TTCACGAAAG TTCAGACGAA CAGGAAACGA TGGATCTGCT GAAGAATTAC
TCCATTTCCC AGATCGTTTG TCCAGATCAC TTGAAACCTT CATTGAAAGA ACGCTTTCCG
GGTGTTTACA CAGAATCCAT AAGTGAGTGG TATTTCTCCG ATCTGGAAGA AGTGGAGAAA
GCCTACAATC TGAAAGACAT TCATCATTTC GAGCTCTCAT CCCTTGCATT GAAGACCCTT
GCGGCGCTGA TAAAGTATGT CAAGTACACG ATGATCACGG AAGAACTGAA TCTGAAACCT
CCTCTTCTCA TCTCCCAGAG AGATTACATG ATACTCGATT CCGCGACGGT GGAAAATCTT
TCGTTGATCC CCGGTGACAG GGGAAAGAAC CTCTTCGATG TGCTGAACAA CACGGAAACC
CCCATGGGAG CTCGACTTCT GAAAAAATGG ATTCTTCACC CCCTGGTCGA TAGGAAACAG
ATCGAAGAAA GGCTCGAGAC TGTGGAAAAA CTGGTGAGTG ACAGAATGAA CCTGGAAGAG
TTGAGGGATC TTCTTTCGAA CGTGAGGGAT GTGGAGCGGA TCGTTTCGCG GGTGGAATAC
AACAGGTCCG TTCCCAGGGA TCTGGTGGCA CTCAGAGAGA CGCTGGAGAT CATCCCGAAA
CTGAACGAAA TTCTTTCAAC CTTCGGTGTG TTCAAGAACC TCGCCTTCCC GGAAAGACTG
CTTGACCTGC TTCAAAGAGC CGTTGAAGAT GACCCGGCGG GAAGCCCTGG TGAGGGAAAA
GTTATAAAGA GAGGATTCTC ACCCGAACTC GACGAGTACA GGGATCTTTT GGAACATGCC
GAAGAGAGAC TCAAAGAGTT CGAAGAGAAG GAGAGAAAAA GAACTGGTAT CCAAAAGTTG
AAGGTTGGAT ACAACCAGGT CTTTGGTTAC TACATAGAGG TGACGAAGGC GAATCTGGAC
AAGATTCCCG ATGATTACGA AAGAAAACAG ACACTCGTCA ATTCTGAAAG ATTCATCACA
CCAGAATTGA AGGAGTTCGA GACAAAGATA ATGGCCGCTA AGGAGAGAAT AGAAGAACTG
GAAAAGGAAC TCTTCAAAAA CGTATGCGAA GAGGTGAAAA AGCACAAGGA GATTCTCCTC
AAAATCTCGG AGGAACTGGC AAAGATCGAT GTGCTTTCGA CGTTGGCTTA CGATGCTATC
CTGTACAGTT ACACAAAACC CATCTTTTCG GAAGGAAGGC TGGAGATCAA GGGGGGAAGA
CACCCGATCG TTGAAAGGTT CACACAGAAT TTTGTTGAAA ACGATATTTA CATGGACAAC
GAGAGAAGGT TTGTGGTAAT AACGGGTCCC AACATGAGCG GGAAGTCCAC TTTCATCAGA
CAGGTGGGTC TCATATCCCT CATGGCGCAG ATAGGATCGT TTGTGCCGGC GCAGAAGGCG
ATTCTTCCCG TGTTCGACAG GATTTTCACG CGAATGGGTG CCAGAGACGA TCTCGCTGGT
GGTAGAAGTA CGTTCCTTGT CGAGATGAAC GAGATGGCAC TCATCCTGCT GAAATCAACG
GAAAAGAGCC TGGTTCTCTT GGACGAGGTG GGAAGAGGTA CGAGCACCCA GGACGGCGTC
AGCATAGCCT GGGCAATCTC AGAGGAACTC ATAAAGAGAG GATGTAAGGT GCTGTTTGCC
ACTCACTTCA CAGAACTCAC CGAACTCGAA AAACACTTTC CGCAGGTCCA GAACAAAACC
ATTCTGGTAA AAGAAGAAGG CAAAAACGTG ATATTCACCC ACAAGGTGGT GGACGGTGTG
GCAGACAGAA GTTACGGAAT AGAGGTCGCA AAGATAGCGG GTATCCCCGA CAGGGTCATA
AACAGAGCTT ATGAAATTCT GGAGAGGAAT TTTAAAAACA ACACGAAGAA AAACGGAAAA
TCGAACAGAT TCAGTCAGCA GATTCCTCTC TTTCCTGTTT GA
|
|---|
| Protein sequence | MKVTPLMEQY LRIKEQYKDS ILLFRLGDFY EAFFEDAKIV SKVLNIVLTR RQDAPMAGIP
YHALNSYLKK LVEAGYKVAI CDQMEEPSKS KKLIRREVTR VVTPGSILED EFLSETNNYM
AVVSEEKGQY CTIFCDVSTG EVLVHESSDE QETMDLLKNY SISQIVCPDH LKPSLKERFP
GVYTESISEW YFSDLEEVEK AYNLKDIHHF ELSSLALKTL AALIKYVKYT MITEELNLKP
PLLISQRDYM ILDSATVENL SLIPGDRGKN LFDVLNNTET PMGARLLKKW ILHPLVDRKQ
IEERLETVEK LVSDRMNLEE LRDLLSNVRD VERIVSRVEY NRSVPRDLVA LRETLEIIPK
LNEILSTFGV FKNLAFPERL LDLLQRAVED DPAGSPGEGK VIKRGFSPEL DEYRDLLEHA
EERLKEFEEK ERKRTGIQKL KVGYNQVFGY YIEVTKANLD KIPDDYERKQ TLVNSERFIT
PELKEFETKI MAAKERIEEL EKELFKNVCE EVKKHKEILL KISEELAKID VLSTLAYDAI
LYSYTKPIFS EGRLEIKGGR HPIVERFTQN FVENDIYMDN ERRFVVITGP NMSGKSTFIR
QVGLISLMAQ IGSFVPAQKA ILPVFDRIFT RMGARDDLAG GRSTFLVEMN EMALILLKST
EKSLVLLDEV GRGTSTQDGV SIAWAISEEL IKRGCKVLFA THFTELTELE KHFPQVQNKT
ILVKEEGKNV IFTHKVVDGV ADRSYGIEVA KIAGIPDRVI NRAYEILERN FKNNTKKNGK
SNRFSQQIPL FPV
|
|---|
| |