Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_0953 |
Symbol | |
ID | 5171074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | + |
Start bp | 979772 |
End bp | 982216 |
Gene Length | 2445 bp |
Protein Length | 814 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 640563471 |
Product | alpha amylase, catalytic region |
Protein accession | YP_001244547 |
Protein GI | 148270087 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0761659 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGGAAGGT CCTTTTTCAC GTTTCTTCTA ATTCTAGCTG TGAGTTTGTT TGCTGTTTCC TGGCGCGATG TTGTGCTTTA TGAAATCATG ATAGACAGAT TCAACGATGG GGATCCAACG AACAACGATC AAGGTTATGG AGAATACGAT CCTTCTGATC CAGCAAAGTA TAGCGGAGGA GATTTGAAAG GAATAATTGA TAAGCTTGAT TATATCAGAG GTCTGGGAGT AGATGGAATA TGGATTACTC CTCCAGTAGC CAACCAGTGG TGGGATCCGT GGGTTAATTA CGGTGGATAC CATGGATACT GGGCAAGGAA TTTTAAGGAA GTAGACGAAC ATTTTGGGAA TATCGAGACA TACAGGAAGC TTTCAGAAGA AATTCACAGA AAAAATATGT TTCTCATCCA AGATATAGTT GTCAACCATG TTGGAAACTA TTTCAGATTC AAAGCTGGAA AATTCGAAAT TAACACAGGA AGTGTTCCAA CTTTCGCACC AACTCAATTC CCCTTCAATA TGAATGACTA TAATGATCCG AAACAGAGAG AAATGAATGT CTACCACTGG ACTCCTGATA TCACTAATTA CAACGACATT CATCAAAAGC TCAACTATCA GCTTTCAGGT CTCGATGATT TAAATACTGA AAATCCGATG GTCAGAAGCG CTTTGAAAGA CTCCTATGGT TTCTGGATAA AAGAGGTTGG TGTTGACGGC TTCAGAGTGG ATACTGCGAT GTACGTTCCA AAAGATTTCT GGGATGATTT CTTCTTTGGC AAAGACGGAA TAATGACCTT GAAAGATGAT TTCATCGCTT TTGGTGAAGC ATGGCTCACT TCTCCACCGA TGGATGACAG TGCAGAAAAG GAAATAGAGA GTTATTTTGA CCATGGTTTT AACGCCATGC TTGACTTTCC GCTTTGTGAA GAAATACGTC GAGTTCTAAA AGGTGGGAAA CCAACTTCAT GGCTTGCTTA CAGAATAGAA AGGCGTAATC AAACGCTTGA AAAAGGACTT CTGGTCACTT TCATTGACAA TCATGATATG GAGCGATTCA GCAGGGGAAC GGACGAGAAG ACATTGAGAA TGGCAGTCGC TTTTCTAATG ACTTTACCTG GAATTCCTGT TATTTACTAT GGAACAGAAC AGTCTTTTGA AGAAACACGG GCTTCGATGT TTGCAAAGGG ATGGGGATCG GGCGGTAAGG ATCATTTTGA GAAAGGGGAG ATGTACGATT TCATAAAAAG TGCCGTTGAG TTCAGAAAGA GTCACACTGC AACGAGATAC GGTAAGGTCA AAGTTCTTCT GTCGAATTCA GAAGGTGCAG GGCTTCTGGT TTATGAAGTA AAAGATGAGA ATGAAACGCT CATTGTGGTT TTAAACACAT CTAATAATGA CAAGATTAGA ACCATCGATG GTGTGTTTCC TAGTATGGAA AAGGTATTCT CAAGTGATAG AGAGGCTAGG GTTGTTGTTC AGGAAAAGTC CACGGTCTTT ATCGTTCCTC CAAAGAGTCT TACCGTCTTC AAGCTTTCCT CTGTGAATAA ATATGAGAAA CAGACAACGA ATTTGACGTT AAAAACCACC GTGAACATCT ACGAAGATAG AGTAGTAATA TCCGGTGAAA CGAACGGCAA AAGAATGTAC GCCTACATTG ATGGTTTATA TCAAACCATT CCCGAGAAAG TGAATATTGT CGATGGTAAA TACAGTCTTT CCCTGGATCT TTATAAAATG GGTCCTGGAA ACCATTTCAT TATTTTGAAG GTTTACGGAT CCAATCCCAA AGAAGTCCTT TATTCTGAAG AAATCTGGTT TGAGGTGTCT ATACCTACCG AAAAACTCGC AGAAGTGACA GATCCTATGA ATGATGATCA TGGGCCTTTC GGCAGATATA AATATCCACT TGATTTAACT TTCAAGCGGC AAATGGACCT TATTGGTGCA AAGGTGGAAC GCATGGGACC TAATTTGATT GTCTGGATAA AAACGAGAGA AATTACTACG AGCTGGAACC CACCGCTTGG ATTCGATCAT GTGAGTTTTC AAATATTCCT TGATGATCCG AGAAGAAAGG GAGCAGAAGC GTTGCCATTT CAAAATTACG CCATAGATGA TTGGGACTAT GAAATCTTTA TAACAGGATG GAATGTGGCT ATTTTTTCGT CGGAAGGAGC TACCGAGAAA AAATTCGGTG TGCAGATAGG ATCTCCTGAA GTCGTTGTGG TTGATGGGTG GATAAAGATA GCTGTAAAGG GTGAATGGAT TGATTTTCCA GAAAGCTTCA ATGGCTGGAA ATTGTACCTT ACAACTTGGG ATTACGATGG TGTGGAAAAC AGGTTCAGGC CTCTTGAAGA GGAACCAAAA GCTTACAGGT TTGGAGGAGG AAACAACACA GAACCGTACA TAATGGATGA TTTATGGATC GAAATAAAGG AATAA
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Protein sequence | MGRSFFTFLL ILAVSLFAVS WRDVVLYEIM IDRFNDGDPT NNDQGYGEYD PSDPAKYSGG DLKGIIDKLD YIRGLGVDGI WITPPVANQW WDPWVNYGGY HGYWARNFKE VDEHFGNIET YRKLSEEIHR KNMFLIQDIV VNHVGNYFRF KAGKFEINTG SVPTFAPTQF PFNMNDYNDP KQREMNVYHW TPDITNYNDI HQKLNYQLSG LDDLNTENPM VRSALKDSYG FWIKEVGVDG FRVDTAMYVP KDFWDDFFFG KDGIMTLKDD FIAFGEAWLT SPPMDDSAEK EIESYFDHGF NAMLDFPLCE EIRRVLKGGK PTSWLAYRIE RRNQTLEKGL LVTFIDNHDM ERFSRGTDEK TLRMAVAFLM TLPGIPVIYY GTEQSFEETR ASMFAKGWGS GGKDHFEKGE MYDFIKSAVE FRKSHTATRY GKVKVLLSNS EGAGLLVYEV KDENETLIVV LNTSNNDKIR TIDGVFPSME KVFSSDREAR VVVQEKSTVF IVPPKSLTVF KLSSVNKYEK QTTNLTLKTT VNIYEDRVVI SGETNGKRMY AYIDGLYQTI PEKVNIVDGK YSLSLDLYKM GPGNHFIILK VYGSNPKEVL YSEEIWFEVS IPTEKLAEVT DPMNDDHGPF GRYKYPLDLT FKRQMDLIGA KVERMGPNLI VWIKTREITT SWNPPLGFDH VSFQIFLDDP RRKGAEALPF QNYAIDDWDY EIFITGWNVA IFSSEGATEK KFGVQIGSPE VVVVDGWIKI AVKGEWIDFP ESFNGWKLYL TTWDYDGVEN RFRPLEEEPK AYRFGGGNNT EPYIMDDLWI EIKE
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