| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0887 |
|---|
| Symbol | |
|---|
| ID | 5171791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 905889 |
|---|
| End bp | 906428 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640563405 |
|---|
| Product | putative NTPase |
|---|
| Protein accession | YP_001244481 |
|---|
| Protein GI | 148270021 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG1618] Predicted nucleotide kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00120565 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATCC TGATCACCGG AAGGCCGGGT GTTGGGAAAA CCACTTTAAT CAAGAAACTA
TCATGCCTCC TGCAGAACGC AGGGGGCTTT TACACTGAAG AGATAAGAGA GAGCGGAAAA
AGAATAGGTT TCAAGATCGT CACCCTGGAT GGTGAGGAGG GAATCTTGGC AAGAACAGAT
CTTCCTTTTC CATACAGAGT CGGTAAATAC TACGTGAATC TAAAAGACCT GGAAGAGATC
GGTGTAAGAT CGCTCGAAGG AGCCCTTCGG GAGAAAAACC TGATCATCGT AGACGAGATA
GGAAAGATGG AACTCCTATC CAGTAAATTC CGGGAGGTAG TCGAAAAAAT CTTCGATAGC
GAGAAAGATG TGATCGCCAC GATTAAAAAA TCCAGTGACC CGTTTGTAGA AAGAATTAAA
AGCAGAGATG GTGTTGTTGT CTTTGAACTG AACGAGAAAA ACCGTGATTC CTTGTTGAAA
GAGATCCTGT ATGTTTTAAA ATTCAATCGA GGTGAAAACA ATGATACAGG TGCTGATTAA
|
|---|
| Protein sequence | MKILITGRPG VGKTTLIKKL SCLLQNAGGF YTEEIRESGK RIGFKIVTLD GEEGILARTD
LPFPYRVGKY YVNLKDLEEI GVRSLEGALR EKNLIIVDEI GKMELLSSKF REVVEKIFDS
EKDVIATIKK SSDPFVERIK SRDGVVVFEL NEKNRDSLLK EILYVLKFNR GENNDTGAD
|
|---|
| |