| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0863 |
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| Symbol | |
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| ID | 5171423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thermotoga petrophila RKU-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009486 |
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| Strand | - |
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| Start bp | 879825 |
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| End bp | 883004 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640563382 |
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| Product | endo-1,4-beta-xylanase |
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| Protein accession | YP_001244458 |
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| Protein GI | 148269998 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3693] Beta-1,4-xylanase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAGTCA GGAAGAGACG GGGTCTTCTG GATGTTTCAA CCGCCGTACT GGTGGGGATT
TTAGCGGGTT TTCTCGGTGT CGTACTGGCA GCATCGGGTG TTCTGAGTTT CGGGAAAGAA
ACCTCTTCTA AGGGAGATTC TTCTCTCGAA ACAGTTCTTG CTTTGAGTTT TGAAGAAACA
ACAGAAGGTG TGGTCCCATT TGGAAAAGGC GTTGTTCTCA CAGCTTCGAA GGATGTAGCA
GCAGATGGCG CGTACTCTCT AAAGGTCGAG AACAGAACCT CCCCATGGGA TGGGGTAGAA
ATCGACCTGA CCGGAAAGGT GAAATCCGGA GCAGATTACC TTCTTTCCTT CCAGGTCTAT
CAGTCTTCCG GTGCTCCACA ATTGTTCAAC GTAGTCGCGA GAACAGAAGA TGAGAAGGGA
GAGAGGTACG ACGTCATACT CGACAAGGTT GTCGTATCAG ATCACTGGAA AGAGATCTTA
GTACCGTTCT CACCCACGTT CGAAGGCACA CCCGCAAAAT ACTCTCTCAT CATCGTAGCG
TCTAAAAACA CGAATTTCAA TTTCTACCTT GACAAGGTTC AGGTACTCGT TCCAAAAGAA
TCGGGCCCAA AGGCCATCTA TGAAACATCC TTTGAAAGCG GTGTTGGAGA CTGGCAACCC
AGAGGAGACG TGAACATCGA AGTCTCATCT GAAGTAGCAC ATTCAGGTAA GAGTTCACTC
TTTATCTCCA ACAGACAGAA GGGCTGGCAG GGTGCCCAGA TCAACCTGAA AGGAATTCTG
AAAACAGGAA AAACTTACGC CTTTGAAGCC TGGGTCTATC AGAACTCCGG TCAAGATCAA
ACGATCATCA TGACGATGCA GAGAAAGTAC TCATCCGACG CGAACACACA GTATGAGTGG
ATAAAATCAG CTACTGTACC ATCTGGTCAG TGGGTACAGC TCTCTGGAAC GTACACGATC
CCGGCCGGAG TTACCGTGGA AGATCTCACG CTTTACTTCG AATCTCAAAA TCCAACCCTT
GAGTTCTACG TGGATGACGT GAAGATAGTG GATACAACTT CCGCAGAGAT AAAGATTGAA
ATGGAACCTG AAAAAGAGAT ACCCGCTCTG AAAGAAGTAC TGAAAGATTA CTTCAGAGTC
GGAGTTGCAC TGCCGTCCAA GGTCTTCCTC AACCCGAAGG ACATAGAACT CATCACGAAA
CACTTCAACA GCATCACCGC AGAAAACGAG ATGAAACCAG AGAGCCTGCT CGCAGGCATC
GAAAACGGTA AGTTGAAGTT CAGGTTTGAA ACGGCAGACA AATACGTTCA GTTCGTTGAA
GAAAACGGCA TGGTCATAAG AGGTCACACT CTTGTGTGGC ACAGCCAGAC ACCCGACTGG
TTCTTCAAAG ATGAAAACGG GAACCTCCTC TCCAAAGAAG CGATGACGGA AAGACTCAAA
GAGTACATCT ACACCGTTGT CGGACACTTC AAAGGAAAAG TCTACGCATG GGACGTGGTG
AACGAAGCAG TTGATCCGAA CCAGCCGGAT GGACTGAGAA GATCCACCTG GTACCAGATC
ATGGGGCCTG ACTACATAGA ACTCGCCTTC AAGTTCGCAA GAGAAGCAGA TCCAGATGCA
AAACTCTTCT ACAACGACTA CAACACATTC GAGCCCAGAA AGAGAGACAT CATCTACAAC
CTCGTGAAAG ATCTCAAAGA GAAGGGACTC ATCGATGGGA TAGGGATGCA GTGTCACATC
AGTCTTGCAA CAGACATCAA ACAGATCGAA GAGGCCATCA AAAAGTTCAG CACCATACCC
GGTATAGAAA TTCACATCAC AGAACTCGAT ATGAGTGTCT ACAGAGATTC CAGTTCCAAC
TACCCAGAGG CACCGAGGAC GGCACTCATC GAACAGGCTC ACAAAATGAT GCAGCTCTTT
GAGATCTTCA AGAAGTACAG CAACGTGATC ACGAACGTCA CATTCTGGGG TCTCAAGGAC
GATTACTCCT GGAGAGCAAC AAGAAGAAAC GACTGGCCGC TCATCTTCGA CAAAGATCAC
CAGGCGAAAC TCGCTTACTG GGCGATAGTG GCACCTGAGG TCCTTCCACC ACTTCCAAAA
GAAAGCAGGA TCTCCGAAGG CGAAGCAGTG GTAGTGGGGA TGATGGACGA CTCGTACCTG
ATGTCGAAGC CGATAGAGAT CCTTGACGAA GAAGGGAACG TGAAGGCAAC GATCAGGGCA
GTGTGGAAAG ACAGCACGAT CTACATCTAC GGAGAGGTAC AGGACAAGAC AAAGAAACCA
GCAGAAGACG GAGTGGCCAT ATTCATCAAC CCGAACAACG AAAGAACACC CTATCTGCAG
CCTGATGATA CCTACGTTGT GCTGTGGACG AACTGGAAGA CGGAGGTCAA CAGAGAAGAC
GTACAGGTGA AGAAATTCGT TGGGCCTGGC TTTAGAAGAT ACAGCTTCGA GATGTCGATC
ACGATACCGG GTGTGGAGTT CAAGAAAGAC AGCTACATAG GATTTGACGT TGCGGTGATA
GACGACGGGA AGTGGTACAG CTGGAGCGAC ACGACGAACA GCCAGAAGAC GAACACGATG
AACTACGGAA CGCTGAAGCT CGAAGGAATA ATGGTAGCGA CAGCAAAATA CGGAACACCG
GTCATCGATG GAGAGATCGA TGAGATCTGG AACACGACAG AGGAGATAGA GACGAAAGCG
GTGGCTATGG GATCGCTTGA CAAGAATGCG ACAGCGAAAG TGAGGGTGCT GTGGGACGAG
AACTACCTGT ACGTACTTGC GATCGTGAAA GATCCCGTTC TGAACAAAGA CAACAGCAAC
CCGTGGGAGC AGGATTCCGT GGAGATCTTC GTGGATGAGA ACAACCACAA GACAGGATAC
TACGAAGACG ACGACGCGCA GTTCAGGGTG AACTACATGA ACGAGCAGAC CTTTGGAACG
GGAGGAAGTC CAGCGAGGTT CAAGACAGCG GTGAAGCTGA TCGAAGGAGG ATACATAGTT
GAGGCAGCGA TCAAGTGGAA GACGATCAAG CCAACACCGA ACACAGTGAT AGGATTCAAC
ATCCAGGTGA ACGATGCGAA CGAGAAAGGG CAGAGGGTCG GTATCATCTC CTGGAGCGAT
CCCACAAACA ACAGCTGGCA AGATCCTTCA AAGTTCGGTA ACCTCAGACT CATCAAGTGA
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| Protein sequence | MRVRKRRGLL DVSTAVLVGI LAGFLGVVLA ASGVLSFGKE TSSKGDSSLE TVLALSFEET
TEGVVPFGKG VVLTASKDVA ADGAYSLKVE NRTSPWDGVE IDLTGKVKSG ADYLLSFQVY
QSSGAPQLFN VVARTEDEKG ERYDVILDKV VVSDHWKEIL VPFSPTFEGT PAKYSLIIVA
SKNTNFNFYL DKVQVLVPKE SGPKAIYETS FESGVGDWQP RGDVNIEVSS EVAHSGKSSL
FISNRQKGWQ GAQINLKGIL KTGKTYAFEA WVYQNSGQDQ TIIMTMQRKY SSDANTQYEW
IKSATVPSGQ WVQLSGTYTI PAGVTVEDLT LYFESQNPTL EFYVDDVKIV DTTSAEIKIE
MEPEKEIPAL KEVLKDYFRV GVALPSKVFL NPKDIELITK HFNSITAENE MKPESLLAGI
ENGKLKFRFE TADKYVQFVE ENGMVIRGHT LVWHSQTPDW FFKDENGNLL SKEAMTERLK
EYIYTVVGHF KGKVYAWDVV NEAVDPNQPD GLRRSTWYQI MGPDYIELAF KFAREADPDA
KLFYNDYNTF EPRKRDIIYN LVKDLKEKGL IDGIGMQCHI SLATDIKQIE EAIKKFSTIP
GIEIHITELD MSVYRDSSSN YPEAPRTALI EQAHKMMQLF EIFKKYSNVI TNVTFWGLKD
DYSWRATRRN DWPLIFDKDH QAKLAYWAIV APEVLPPLPK ESRISEGEAV VVGMMDDSYL
MSKPIEILDE EGNVKATIRA VWKDSTIYIY GEVQDKTKKP AEDGVAIFIN PNNERTPYLQ
PDDTYVVLWT NWKTEVNRED VQVKKFVGPG FRRYSFEMSI TIPGVEFKKD SYIGFDVAVI
DDGKWYSWSD TTNSQKTNTM NYGTLKLEGI MVATAKYGTP VIDGEIDEIW NTTEEIETKA
VAMGSLDKNA TAKVRVLWDE NYLYVLAIVK DPVLNKDNSN PWEQDSVEIF VDENNHKTGY
YEDDDAQFRV NYMNEQTFGT GGSPARFKTA VKLIEGGYIV EAAIKWKTIK PTPNTVIGFN
IQVNDANEKG QRVGIISWSD PTNNSWQDPS KFGNLRLIK
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