Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tpet_0824 |
Symbol | |
ID | 5170531 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermotoga petrophila RKU-1 |
Kingdom | Bacteria |
Replicon accession | NC_009486 |
Strand | + |
Start bp | 837954 |
End bp | 840020 |
Gene Length | 2067 bp |
Protein Length | 688 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640563343 |
Product | DNA ligase, NAD-dependent |
Protein accession | YP_001244419 |
Protein GI | 148269959 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGAGA GAAAGATCCC AAAGGAAGTA ATTGAAGAAG TGGAAAGGCT CAGAGAGGAG ATCGAGTATC ACAACTACAG ATACTACGTT TTGAACGATC CAGTTATTAC GGACGAGGAA TATGACAAAC TCATGAGAAG GCTCATTGAA CTGGAAAGGA TGTATCCAGA ACTGGTTACA CCGGATTCGC CAACTCAGAG GGTAGGGGGA AAGGTACTCG AAGGTTTTAA AACGGTAAAG CATTCCGTTC CTATGTTGAG TCTGGATAAC ACGTACAACG AAGAAGAGAT TCTCGAATTC GATCGGCGTG TTAAAAAAAC TCTTCAGGAG GCAGAAGTCG AGTACGTTGC CGAGCTGAAG ATAGACGGCG TTTCCATAGC TCTCAGATAT GAGAACGGAA AGTTCGTCTT GGGAGCGACA CGGGGAGATG GGATAGAAGG AGAGGATGTC TCTGAGAATG TGAAGACCGT ACGCAGTATT CCACTTCGTC TGAGAAAGCC CGTCACCGTA GAAGTGAGAG GGGAAATATA CATGCCTGTG GATGAATTCA AAAGGTTGAA CGATGAAAGA GAAGAAGAAG GACTACCTCC TTTTGCCAAT CCGAGGAATG CCGCTGCAGG AACGCTTCGG CAGTTGAACA CGGCACTCGT TGCGGCAAGG CGTCTGGATT CGTTCATCTA CTATGTGGTT CATCCCGAAA ACTACGGTTT GAAGACACAA TGGGAAGCTC TCCAGTTTCT GAAAGAACTC GGTTTCAAGG TGAATCCACA CTCTAAACTG TGTAAAAACA TTCAGGAAGT GATCGATTAC TGGAGGGAGT GGGAAGAAAG AAAGAAGGAG CTGGATTATT GGGTTGATGG CGTTGTGGTG AAGGTGAACA GATTCGATTT CCAGAGAATT CTCGGCGAAA CATCGAAAGC ACCGCGATGG GCTATCGCAT TCAAATTTCC CGCTGAGCAG GCAAGAACCA GGGTGCTGGA TGTCACCATC CAGGTTGGAC GAACAGGTGT TCTCACACCC GTTGCCGAGC TCGAACCCGT TCAGCTCGCT GGAACGATTG TGAAGAGAGC TTCGCTGCAC AATTTCGAGT ACATAAGAGA AAAAGATATC AGGATAGGAG ACTATGTCTT TGTGGAAAAA GCCGGTGGAA TCATTCCTCA AATAGTCAAA TCGATACCGG AATTGAGAAC CGGAAGCGAA AAGGAAATAA AACCACCCGA TAAGTGTCCT GTCTGCGGCG GGAAAGTAGG AAAGTTGGAT CCCGAAGAGG TTGCTCTCAG GTGTCTAAAC CCGCATTGTC CTGCCAAACT GAAGAGGGCT TTGAGGACTC TGGTTTCCAG AGAGGCTCTC GATATTGAAG GACTCGGGGA GAAGTTGATA GACAGATTGG TCGATGCTGG CCTTGTAAAG GATATAGCGG ATATCTTCTA CCTCACTCCT TTCGATCTCG CTCAGCTTGG ACCGGGGATC GGTCAGCGAA CGATAGCTAA GATTCTCCAA GAGATAGAAG AGGCGAAGAA GAGGCCGCTC CATAAACTGA TAACGGGTCT TGGAATTCCC ATGGTAGGTC AGAAGACGGC GAAAATCCTC GCGGAACATT TCAAATCCCT GGAAGCAATC GCAGATGCTT CTTATGAAAC ACTGAAGGAC ATACCGGGAA TCGGTCCAGA AATCGCAAAG AGCATCGTTG AGTACTTCCG AAATCCAAAA ACAAGGGAAA TCATTGAAAA ACTCAAAAAA GCTGGAGTGA AACTCGAAGA GAGAGTTATG AAACTCGATA TTCTGAAGGG ATTGACTTTC GCCGTGACAG GTACCTTGAA GAACTTTACG AGAGAAGAAA TAGTAGAGTT TTTCGAGAAG CTGGGAGCGA AAGTCGTCAA CTCTGTGAGC AGGAACACGG ACTATCTCAT AGTGGGTGAA AATCCCGGTT CCAAGTACGA AAAAGCGAAG ATGTTGAAAG TAAAAACGAT GAGTGAGGAA GAATTCCTCG AGTTTGTCAG AAAAAGAGCA GAATTGAAAG GGTACAACTT CGATGAGATA ATGAGGAGTT GGAAGGAATG GAGTTGA
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Protein sequence | MSERKIPKEV IEEVERLREE IEYHNYRYYV LNDPVITDEE YDKLMRRLIE LERMYPELVT PDSPTQRVGG KVLEGFKTVK HSVPMLSLDN TYNEEEILEF DRRVKKTLQE AEVEYVAELK IDGVSIALRY ENGKFVLGAT RGDGIEGEDV SENVKTVRSI PLRLRKPVTV EVRGEIYMPV DEFKRLNDER EEEGLPPFAN PRNAAAGTLR QLNTALVAAR RLDSFIYYVV HPENYGLKTQ WEALQFLKEL GFKVNPHSKL CKNIQEVIDY WREWEERKKE LDYWVDGVVV KVNRFDFQRI LGETSKAPRW AIAFKFPAEQ ARTRVLDVTI QVGRTGVLTP VAELEPVQLA GTIVKRASLH NFEYIREKDI RIGDYVFVEK AGGIIPQIVK SIPELRTGSE KEIKPPDKCP VCGGKVGKLD PEEVALRCLN PHCPAKLKRA LRTLVSREAL DIEGLGEKLI DRLVDAGLVK DIADIFYLTP FDLAQLGPGI GQRTIAKILQ EIEEAKKRPL HKLITGLGIP MVGQKTAKIL AEHFKSLEAI ADASYETLKD IPGIGPEIAK SIVEYFRNPK TREIIEKLKK AGVKLEERVM KLDILKGLTF AVTGTLKNFT REEIVEFFEK LGAKVVNSVS RNTDYLIVGE NPGSKYEKAK MLKVKTMSEE EFLEFVRKRA ELKGYNFDEI MRSWKEWS
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