Gene Tpet_0824 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTpet_0824 
Symbol 
ID5170531 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThermotoga petrophila RKU-1 
KingdomBacteria 
Replicon accessionNC_009486 
Strand
Start bp837954 
End bp840020 
Gene Length2067 bp 
Protein Length688 aa 
Translation table11 
GC content46% 
IMG OID640563343 
ProductDNA ligase, NAD-dependent 
Protein accessionYP_001244419 
Protein GI148269959 
COG category[L] Replication, recombination and repair 
COG ID[COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) 
TIGRFAM ID[TIGR00575] DNA ligase, NAD-dependent 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGAGA GAAAGATCCC AAAGGAAGTA ATTGAAGAAG TGGAAAGGCT CAGAGAGGAG 
ATCGAGTATC ACAACTACAG ATACTACGTT TTGAACGATC CAGTTATTAC GGACGAGGAA
TATGACAAAC TCATGAGAAG GCTCATTGAA CTGGAAAGGA TGTATCCAGA ACTGGTTACA
CCGGATTCGC CAACTCAGAG GGTAGGGGGA AAGGTACTCG AAGGTTTTAA AACGGTAAAG
CATTCCGTTC CTATGTTGAG TCTGGATAAC ACGTACAACG AAGAAGAGAT TCTCGAATTC
GATCGGCGTG TTAAAAAAAC TCTTCAGGAG GCAGAAGTCG AGTACGTTGC CGAGCTGAAG
ATAGACGGCG TTTCCATAGC TCTCAGATAT GAGAACGGAA AGTTCGTCTT GGGAGCGACA
CGGGGAGATG GGATAGAAGG AGAGGATGTC TCTGAGAATG TGAAGACCGT ACGCAGTATT
CCACTTCGTC TGAGAAAGCC CGTCACCGTA GAAGTGAGAG GGGAAATATA CATGCCTGTG
GATGAATTCA AAAGGTTGAA CGATGAAAGA GAAGAAGAAG GACTACCTCC TTTTGCCAAT
CCGAGGAATG CCGCTGCAGG AACGCTTCGG CAGTTGAACA CGGCACTCGT TGCGGCAAGG
CGTCTGGATT CGTTCATCTA CTATGTGGTT CATCCCGAAA ACTACGGTTT GAAGACACAA
TGGGAAGCTC TCCAGTTTCT GAAAGAACTC GGTTTCAAGG TGAATCCACA CTCTAAACTG
TGTAAAAACA TTCAGGAAGT GATCGATTAC TGGAGGGAGT GGGAAGAAAG AAAGAAGGAG
CTGGATTATT GGGTTGATGG CGTTGTGGTG AAGGTGAACA GATTCGATTT CCAGAGAATT
CTCGGCGAAA CATCGAAAGC ACCGCGATGG GCTATCGCAT TCAAATTTCC CGCTGAGCAG
GCAAGAACCA GGGTGCTGGA TGTCACCATC CAGGTTGGAC GAACAGGTGT TCTCACACCC
GTTGCCGAGC TCGAACCCGT TCAGCTCGCT GGAACGATTG TGAAGAGAGC TTCGCTGCAC
AATTTCGAGT ACATAAGAGA AAAAGATATC AGGATAGGAG ACTATGTCTT TGTGGAAAAA
GCCGGTGGAA TCATTCCTCA AATAGTCAAA TCGATACCGG AATTGAGAAC CGGAAGCGAA
AAGGAAATAA AACCACCCGA TAAGTGTCCT GTCTGCGGCG GGAAAGTAGG AAAGTTGGAT
CCCGAAGAGG TTGCTCTCAG GTGTCTAAAC CCGCATTGTC CTGCCAAACT GAAGAGGGCT
TTGAGGACTC TGGTTTCCAG AGAGGCTCTC GATATTGAAG GACTCGGGGA GAAGTTGATA
GACAGATTGG TCGATGCTGG CCTTGTAAAG GATATAGCGG ATATCTTCTA CCTCACTCCT
TTCGATCTCG CTCAGCTTGG ACCGGGGATC GGTCAGCGAA CGATAGCTAA GATTCTCCAA
GAGATAGAAG AGGCGAAGAA GAGGCCGCTC CATAAACTGA TAACGGGTCT TGGAATTCCC
ATGGTAGGTC AGAAGACGGC GAAAATCCTC GCGGAACATT TCAAATCCCT GGAAGCAATC
GCAGATGCTT CTTATGAAAC ACTGAAGGAC ATACCGGGAA TCGGTCCAGA AATCGCAAAG
AGCATCGTTG AGTACTTCCG AAATCCAAAA ACAAGGGAAA TCATTGAAAA ACTCAAAAAA
GCTGGAGTGA AACTCGAAGA GAGAGTTATG AAACTCGATA TTCTGAAGGG ATTGACTTTC
GCCGTGACAG GTACCTTGAA GAACTTTACG AGAGAAGAAA TAGTAGAGTT TTTCGAGAAG
CTGGGAGCGA AAGTCGTCAA CTCTGTGAGC AGGAACACGG ACTATCTCAT AGTGGGTGAA
AATCCCGGTT CCAAGTACGA AAAAGCGAAG ATGTTGAAAG TAAAAACGAT GAGTGAGGAA
GAATTCCTCG AGTTTGTCAG AAAAAGAGCA GAATTGAAAG GGTACAACTT CGATGAGATA
ATGAGGAGTT GGAAGGAATG GAGTTGA
 
Protein sequence
MSERKIPKEV IEEVERLREE IEYHNYRYYV LNDPVITDEE YDKLMRRLIE LERMYPELVT 
PDSPTQRVGG KVLEGFKTVK HSVPMLSLDN TYNEEEILEF DRRVKKTLQE AEVEYVAELK
IDGVSIALRY ENGKFVLGAT RGDGIEGEDV SENVKTVRSI PLRLRKPVTV EVRGEIYMPV
DEFKRLNDER EEEGLPPFAN PRNAAAGTLR QLNTALVAAR RLDSFIYYVV HPENYGLKTQ
WEALQFLKEL GFKVNPHSKL CKNIQEVIDY WREWEERKKE LDYWVDGVVV KVNRFDFQRI
LGETSKAPRW AIAFKFPAEQ ARTRVLDVTI QVGRTGVLTP VAELEPVQLA GTIVKRASLH
NFEYIREKDI RIGDYVFVEK AGGIIPQIVK SIPELRTGSE KEIKPPDKCP VCGGKVGKLD
PEEVALRCLN PHCPAKLKRA LRTLVSREAL DIEGLGEKLI DRLVDAGLVK DIADIFYLTP
FDLAQLGPGI GQRTIAKILQ EIEEAKKRPL HKLITGLGIP MVGQKTAKIL AEHFKSLEAI
ADASYETLKD IPGIGPEIAK SIVEYFRNPK TREIIEKLKK AGVKLEERVM KLDILKGLTF
AVTGTLKNFT REEIVEFFEK LGAKVVNSVS RNTDYLIVGE NPGSKYEKAK MLKVKTMSEE
EFLEFVRKRA ELKGYNFDEI MRSWKEWS