| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0814 |
|---|
| Symbol | |
|---|
| ID | 5170537 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 826142 |
|---|
| End bp | 827281 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640563333 |
|---|
| Product | ROK family protein |
|---|
| Protein accession | YP_001244409 |
|---|
| Protein GI | 148269949 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00162994 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAATACA ACTCTCCGAG AATAAAAATC CTCAACAAAA AGAGCATCCT CAAGGTGATT
CACGAAAACC ATCCCATCTC CAGATCAGAC ATATCGGAGG TCACAGGGCT CACGCCGAGC
AGTGTAACAA GACTCACGAA AGAACTCATA GATGAAGGTT ATATAAGAGA GATCGGTACG
ATGGGGAAAA ATTCTCCCGG AAGAAGAAGA AGAATTCTCC TCGATCTAAG AAAGAACGCC
TTTTTGAGTT TAGTCTTCGA TATAGGAGTG AATATAACGA CCTACGGTGT TGGATTTTTC
GACGGAGAAG TAGAACCGAG GGGAACTTTC AACACACCGA GGGAACCAGT GGAATTCTTC
AACATAGTCA AAGAAATCTA CGAACGCATC TCAGGTGAAT ATAGAATTTC AAGAATCTCT
CTTTCCGTTC CAGGAATGGT TGATATGGAA GAAAAGAAAA TACTTCTCGC CCCAAACCTT
GAGTGGGAGA ATGTGAGTAT AAAAGAACTC CTCAAAGTCG ATGTTCCCGT TCTTGCGGAC
AACGAGGCGA ATCTTTCCAT GCTCGCCGAA AAGTACCACT CAGAAGATCT GAGAAACGTG
AAAGAAGCCG TTTTTATCAT CATAAGAGAG GGTGTTGGAG CGGGATTGAT GATCGATGGA
AAGATCTTCA GAGGTCCTTC TTTTACAGCG GGTGAAGCAG GGCACATGAC AGTGAACATG
TACTCCGACA GGCAGTGCCA CTGTTCCAAC TGGGGTTGCT GGGAACTCGT CTCTTCGATC
AACTGGGCGA TCGAGCAGTA CGGGAAAGAA CTCCCTGGAA AAAACGCAAT AGAGAAATTC
CAGGCGCTGA AGCAGAGAAA CGATGCAAAA AGAATACTGA TGAAATTTGC GGAAAACATA
GCGGTCGGCA TCGTGAACCT GGTGAACATA TTGAATCCTG AACTCGTGAT CCTTGGTGGG
GAAGTCGTCG ATCTTGGTGA TAGTTTTCTC GATATTGTAA AAGACTTTGT CCATCAAAGA
GCTTTGAAGG CCGCTGTGAA GGATCTGAAA ATCAGAACCA CAGAATTCAG AAACATCAGT
TCCAACCTCG TGGGCGCGGC CGTACTGGCT GTCGAGGACA TAATAGAAGA AGTCAAATAA
|
|---|
| Protein sequence | MKYNSPRIKI LNKKSILKVI HENHPISRSD ISEVTGLTPS SVTRLTKELI DEGYIREIGT
MGKNSPGRRR RILLDLRKNA FLSLVFDIGV NITTYGVGFF DGEVEPRGTF NTPREPVEFF
NIVKEIYERI SGEYRISRIS LSVPGMVDME EKKILLAPNL EWENVSIKEL LKVDVPVLAD
NEANLSMLAE KYHSEDLRNV KEAVFIIIRE GVGAGLMIDG KIFRGPSFTA GEAGHMTVNM
YSDRQCHCSN WGCWELVSSI NWAIEQYGKE LPGKNAIEKF QALKQRNDAK RILMKFAENI
AVGIVNLVNI LNPELVILGG EVVDLGDSFL DIVKDFVHQR ALKAAVKDLK IRTTEFRNIS
SNLVGAAVLA VEDIIEEVK
|
|---|
| |