| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0810 |
|---|
| Symbol | |
|---|
| ID | 5170206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 822269 |
|---|
| End bp | 823240 |
|---|
| Gene Length | 972 bp |
|---|
| Protein Length | 323 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640563329 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_001244405 |
|---|
| Protein GI | 148269945 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.869205 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGGAAAC TTCTGGTTTT TCTTTCGGTT CTCCTGGTTG CTGGTCTGTC GCTGGCTCTC
ACCATAGGTG TTATCGGAAA ATCCGTCCAT CCTTACTGGT CACAGGTGGA ACAGGGTGTT
AAAGCGGCGG GGAAGGCCCT CGGAGTGGAT ACGAAGTTCT TCGTCCCACA AAAGGAAGAT
ATCAACGCCC AGCTTCAGAT GCTCGAATCT TTCATAGCCG AGGGCGTGGA CGGTATTGCG
ATCGCACCGT CCGATCCAAC TGCAGTCATC CCCACCATCA AGAAAGCCCT TGAGATGGGT
ATTCCTGTTG TCACTCTCGA TACAGACTCT CCAGACAGCG GAAGGTACGT CTACATCGGA
ACGGACAACT ACCAGGCGGG TTACACAGCC GGTCTCATCA TGAAGGAGCT CCTTGGAGGA
AAGGGTAAGG TCGTCATAGG AACGGGTTCA CTGACGGCTA TGAATTCCCT TCAGAGAATC
CAGGGGTTCA AAGACGCCAT CAAGGATTCA GAGATAGAAA TAGTCGACAT TCTCAACGAT
GAAGAAGACG GTGCAAGGGC TGTGTCTCTG GCGGAAGCTG CCCTCAATGC CCATCCAGAT
CTCGATGCAT TTTTCGGTGT GTACGCCTAC AACGGACCTT CTCAGGCACT CGTGGTGAAA
AATGCTGGAA AAGTTGGGAA AGTGAAGATC GTCTGTTTCG ATACAACACC CGATATTCTT
CAGTACGTGA AAGAGGGAGT TATTCAGGCA ACAATGGGGC AGAGACCTTA CATGATGGGA
TACCTGTCAG TCACAGTTCT TTATCTGATG AACAAGATAG GTGTTCAGAA CACTCTGATG
ATGCTTCCGA AAGTCAAGGT TGATGGAAAG GTTGACTACG TGATCGACAC AGGTGTTGAC
GTGGTCACAC CAGAGAACCT CGATGAATAT TTGAAGAAGA TGGAAGAACT CGGAATTCCA
ATAAAATTCT GA
|
|---|
| Protein sequence | MRKLLVFLSV LLVAGLSLAL TIGVIGKSVH PYWSQVEQGV KAAGKALGVD TKFFVPQKED
INAQLQMLES FIAEGVDGIA IAPSDPTAVI PTIKKALEMG IPVVTLDTDS PDSGRYVYIG
TDNYQAGYTA GLIMKELLGG KGKVVIGTGS LTAMNSLQRI QGFKDAIKDS EIEIVDILND
EEDGARAVSL AEAALNAHPD LDAFFGVYAY NGPSQALVVK NAGKVGKVKI VCFDTTPDIL
QYVKEGVIQA TMGQRPYMMG YLSVTVLYLM NKIGVQNTLM MLPKVKVDGK VDYVIDTGVD
VVTPENLDEY LKKMEELGIP IKF
|
|---|
| |