| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0779 |
|---|
| Symbol | clpX |
|---|
| ID | 5171787 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | + |
|---|
| Start bp | 791121 |
|---|
| End bp | 792341 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640563297 |
|---|
| Product | ATP-dependent protease ATP-binding subunit ClpX |
|---|
| Protein accession | YP_001244374 |
|---|
| Protein GI | 148269914 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000165235 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGAA AGTTCTGTAG TTTTTGTGGA CGCGATATTC AGCAGGTGGA AAGGCTGATT
GCTGGTCCCA ACAACGTTTA CATATGTAAC GAGTGTATCG ATCTGTTTCA CGATCTTCTG
AGAAGCGATA GAAAAGTCCG TATAAAAAAC GAAATAAAAG AAATTCCAAC ACCTGCGGAA
ATCAAGGCCG AACTCGACAA GTACATAATA GGACAGGAAA GGGCGAAGAA AGTCCTTTCT
GTGGCTGTTT ACAACCATTA CAAACGGGTG TTCTCAAACC TGGATTCTAA CGATGTGGAG
ATAGAGAAAT CGAACGTTCT TCTCATTGGT CCCACAGGCA CCGGGAAAAC CTATCTTGCG
AGAATTCTCG CCAAAATTCT CAATGTTCCA TTCGCCATAG CCGATGCAAC ACCTCTCACA
GAGGCAGGAT ATGTGGGAGA GGACGTGGAA AACGTTGTTC TCAGGCTGCT GGAAGCAGCG
AACTTCGACA TTGAGAGAGC ACAGTACGGA ATCATCTACA TAGATGAAAT CGACAAGATA
GCCAAGAAAT CCCCAAATCC TTCGATAACA AGAGATGTCT CCGGTGAAGG AGTGCAGCAA
GCTCTCCTCA AGATACTGGA GGGAACGATA GCGAACGTTC CACCACAGGG TGGAAGGAAA
CATCCGTACC AGGAGTTCAT AAAGGTGGAC ACAAGGAACA TCCTTTTCAT AGCCGGAGGA
GCGTTCGACG GTCTTGAGGA AATTATAAAG AGGCGTATTC AGAGTACCAC CATGGGATTC
GGTGCGGAGA TAAAGAGCAA AAAAGAGATG AGACTTGGAG AGATCCTGAA ACATGTAACA
CCGGACGATC TGGTACAGTA CGGTCTCATT CCAGAATTTG TTGGAAGATT TCCTGTGATA
GCGACGCTCG ATGATCTGTC GGAAGACGAT CTCGTTAGGA TACTGAAAGA ACCGAAGAAC
GCCGTTGTGA GGCAGTATCA AAAACTGTTC GAGATCGACG GTGTGAAACT GGAAGTAACG
GACGAAGCCC TCAGGATCAT AGCGAAGAAG GCGATCAAGA GAGGCACAGG TGCACGCGCT
CTGAAGAACG TGTTTGAGGA AATGATGATA GATATGATGT TTGAACTTCC AAATTTGAAG
AACGTGGAAA AGGTCGTTAT CACGGAAGAA GTTGCTCTTG GAAAGGAAAA ACCCATCGTT
GTTATGAGGG AATCGGCATG A
|
|---|
| Protein sequence | MAGKFCSFCG RDIQQVERLI AGPNNVYICN ECIDLFHDLL RSDRKVRIKN EIKEIPTPAE
IKAELDKYII GQERAKKVLS VAVYNHYKRV FSNLDSNDVE IEKSNVLLIG PTGTGKTYLA
RILAKILNVP FAIADATPLT EAGYVGEDVE NVVLRLLEAA NFDIERAQYG IIYIDEIDKI
AKKSPNPSIT RDVSGEGVQQ ALLKILEGTI ANVPPQGGRK HPYQEFIKVD TRNILFIAGG
AFDGLEEIIK RRIQSTTMGF GAEIKSKKEM RLGEILKHVT PDDLVQYGLI PEFVGRFPVI
ATLDDLSEDD LVRILKEPKN AVVRQYQKLF EIDGVKLEVT DEALRIIAKK AIKRGTGARA
LKNVFEEMMI DMMFELPNLK NVEKVVITEE VALGKEKPIV VMRESA
|
|---|
| |