| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0679 |
|---|
| Symbol | |
|---|
| ID | 5171097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 682700 |
|---|
| End bp | 683656 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640563186 |
|---|
| Product | electron transport complex, RnfABCDGE type, D subunit |
|---|
| Protein accession | YP_001244275 |
|---|
| Protein GI | 148269815 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
|---|
| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTGA TAAGCGCTTA CGCTCCACAC CTTCGAGAAG AGGATGATGT GAGAAAGATC
ATGCTGGATG TGCTCATAGC CCTATCACCA GCGGTTATTG GGGCGGCTTA TTTCTTCGGA
TGGTATGCTC TATTTCTCTG TATCGCAGGA GCGGTGATAG GTGAGCTGTT CGATATATTC
GTCATGAGAT ACCTGAGAGG AGTGAAGGAT TTCGTCCCGG ATGGCAGCGG GGCAGTGACA
GGACTGCTTC TGGCGATGAA CGTGAGCACA AGGCTTCCTT TCTGGGCTTT TTTGTTGGGA
CTCGTTTTCG CTCTGGGGAT CGGGAAACAC GTGTTCGGAG GACTCGGCCA GAACATTTTC
AACCCTGCGC TCGTCGGAAG AGCGTTTCTG CTCATTTCTT TTCCCACTTA CATGACCACC
TGGGTTGTAC CCGGGGCAGG ATTCTGGAAA TCTCCAGCGG ATGTGGTAAC GGCAGCAACT
CCTCTTGCAC TTTTCAAGGA ACACGGTGTT TTCACACCCT ATTGGGATCT GTTCATAGGT
AAGGTTGGAG GATCCTTAGG TGAAACGAGT GCACTTCTTC TCATAATTGG TTTCATCTAT
CTTCTCTTGA GAAAGAGAGT GAAGATATTC ATTCCTGTCT CCTATATAGG AACTGTTCTT
GTGTTTTCTT CGATAGCTTA TTTGATGAAT CCAAGGTACG GTGATCCTCT CTTTCACCTC
CTCAGTGGTG GTCTCATGCT CGGTGCACTT TTCATGGCCA CCGATATGGT GACGAGTCCC
ATCACCGCGA AGGGACAGGT GATCTTCGGG ATTGGATGTG GCGTTCTCAC GATGGCTATA
AGACTCTTTG GAGCGTATCC TGAAGGCGTT TCATTTTCGA TCCTTTTCAT GAATGCACTG
GTTCCCCTGA TAGACAGGTA CACCAGACCG CGCATCTTCG GTGAGGTGAA AAAATGA
|
|---|
| Protein sequence | MKLISAYAPH LREEDDVRKI MLDVLIALSP AVIGAAYFFG WYALFLCIAG AVIGELFDIF
VMRYLRGVKD FVPDGSGAVT GLLLAMNVST RLPFWAFLLG LVFALGIGKH VFGGLGQNIF
NPALVGRAFL LISFPTYMTT WVVPGAGFWK SPADVVTAAT PLALFKEHGV FTPYWDLFIG
KVGGSLGETS ALLLIIGFIY LLLRKRVKIF IPVSYIGTVL VFSSIAYLMN PRYGDPLFHL
LSGGLMLGAL FMATDMVTSP ITAKGQVIFG IGCGVLTMAI RLFGAYPEGV SFSILFMNAL
VPLIDRYTRP RIFGEVKK
|
|---|
| |