Gene Tpet_0666 details

Gene Information

• Locus tag: Tpet_0666
• ID: 5171250
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thermotoga petrophila RKU-1
• Kingdom: Bacteria
• Replicon accession: NC_009486
• Strand: -
• Start bp: 674694
• End bp: 676595
• Gene Length: 1902 bp
• Protein Length: 633 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640563173
• Product: DNA topoisomerase I
• Protein accession: YP_001244262
• Protein GI: 148269802
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0550] Topoisomerase IA
• TIGRFAM ID: [TIGR01051] DNA topoisomerase I, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.000000220674
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAGGA AAGTGAAGAA ATACATCGTC GTTGAGTCTC CTGCCAAGGC GAAGACGATC 
AAGAGTATTC TTGGAAACGA ATACGAAGTC TTCGCTTCGA TGGGTCATAT CATAGATCTT 
CCCAAAAGTA AATTTGGGAT AGATCTGGAA AAGGATTTCG AACCGGAATT CGTGGTAATA 
AAAGGGAAAG AAAAAGTGGT CGAAAAGCTG AAAGATCTTG CAAAAAAGGG AGAACTGCTC 
ATCGCTTCTG ATATGGATAG GGAAGGAGAA GCTATAGCCT GGCACATAGC CAGAGTGACG 
AACACTCTTG GGAAGAAGAA CAGAATTGTG TTCTCTGAGA TCACTCCTCG CGTGATAAGA 
GAAGCCGTTA AAAATCCTCG AGAAATTGAC ATGAAGAAAG TTCGAGCACA GCTTGCAAGG 
AGAATTCTGG ATAGGATCGT TGGTTATTCT CTGAGTCCGG TACTCTGGAG AAATTTTAAA 
ACCAACCTGA GCGCTGGCAG GGTCCAATCG GCTACACTGA AGCTCGTTTG TGATAGAGAG 
AGAGAAATCC TCAGGTTTGT ACCAAAGAAG TACCACAAGA TCACCGTCAA ATTCGATGGT 
CTCACGGCAG AAATAGATGT GAAAGAAAAG AAGTTTTTCG ACTCTGAAAC GTTGAAAGAG 
ATCAAGAGTA TAGACGAACT CGTCGTAGAG GAGAAAGAGG TTTCTTTGAA AAACTTTTCA 
CCTCCAGAAC CCTTCAAAAC CAGTACCCTC CAGCAGGAGG CGTATTCCAA ACTGGGTTTC 
TCCGTTTCCA AAACCATGAT GATCGCCCAG CAGTTGTATG AAGGTGTAGA AACGAAAGAT 
GGGCATATCG CGTTCATAAC CTATATGAGA ACAGATTCAA CGCGTGTATC GGATTACGCG 
AAAGATGAAG CCAGGAATCT GATAACAGAA GTCTTTGGAG AGGATTATGT TGGTGCGAAA 
GGAGCAAAGA GAAAAGGCAA CACAAAAATA CAGGATGCGC ACGAAGCGAT TCGTCCCACG 
AACGTTTTCA TGACACCCGA GGAAGCGGGG AAATACCTGA ATCCTGACCA GAAAAAACTC 
TACGAGTTGA TATGGAAGAG ATTTCTCGCT TCTCAGATGA AGCCTTCTCA ATACGAAGAA 
ACTCGCTTTG TCCTGAGAAC AAAAGACGGA AAGTACAGAT TCAAAGGAAC GGTGTTGAAA 
AAGATTTTCG ATGGATACGA AAAGGTGTGG ACGACGGAAA GAAACACAGG GGAGTTTCCT 
TTCGAAGAAG GAGAATCTGT GAAACCGGTG GTTGTAGAAA TAGAAGAACA GGAAACCAAA 
CCAAAACCAA GGTACACTGA AGGTTCACTC GTGAAGGAAA TGGAAAGGCT TGGTATAGGT 
CGTCCCAGCA CCTACGCATC CACGATAAAG CTCCTGTTGA ATAGGGGTTA CATAAAGAAG 
ATCAGAGGTT ATCTCTATCC TACTGTCGTT GGAAGTGTTG TCATGGATTA TCTGGAGAAA 
AAGTACTCCG ACGTTGTTAG CGTTTCTTTC ACGGCTGAGA TGGAGAAGGA TCTCGATGAA 
GTCGAACAGG GCAAGAAGAC AGACAAGATC GTCTTGCAAG AGTTTTATCA ATCCTTTTCC 
AGTGTGTTCG ATAGGAACGA CAGGATTGTG ATCGATTTTC CAACGAACCA GAAATGTTCG 
TGTGGAAAAG AAATGAGACT CTCTTTTGGG AAATACGGCT TCTATTTGAA ATGTGAGTGT 
GGTAGCACCA GAAGCGTGAG AAACGATGAA ATTGCAGTCA TAGACGATGG AAAAATATTC 
CTGGGGAGGA AAGACAGTGA GAGTGGCTCT CCTGATGGGA GGAGTATCAA GGGAAAGAGA 
AATCTCCCTG AGAAGCGGAG AAAGGGTAAA AAAAGCTCTT GA 

 

Protein sequence

MNRKVKKYIV VESPAKAKTI KSILGNEYEV FASMGHIIDL PKSKFGIDLE KDFEPEFVVI 
KGKEKVVEKL KDLAKKGELL IASDMDREGE AIAWHIARVT NTLGKKNRIV FSEITPRVIR 
EAVKNPREID MKKVRAQLAR RILDRIVGYS LSPVLWRNFK TNLSAGRVQS ATLKLVCDRE 
REILRFVPKK YHKITVKFDG LTAEIDVKEK KFFDSETLKE IKSIDELVVE EKEVSLKNFS 
PPEPFKTSTL QQEAYSKLGF SVSKTMMIAQ QLYEGVETKD GHIAFITYMR TDSTRVSDYA 
KDEARNLITE VFGEDYVGAK GAKRKGNTKI QDAHEAIRPT NVFMTPEEAG KYLNPDQKKL 
YELIWKRFLA SQMKPSQYEE TRFVLRTKDG KYRFKGTVLK KIFDGYEKVW TTERNTGEFP 
FEEGESVKPV VVEIEEQETK PKPRYTEGSL VKEMERLGIG RPSTYASTIK LLLNRGYIKK 
IRGYLYPTVV GSVVMDYLEK KYSDVVSVSF TAEMEKDLDE VEQGKKTDKI VLQEFYQSFS 
SVFDRNDRIV IDFPTNQKCS CGKEMRLSFG KYGFYLKCEC GSTRSVRNDE IAVIDDGKIF 
LGRKDSESGS PDGRSIKGKR NLPEKRRKGK KSS