| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0652 |
|---|
| Symbol | |
|---|
| ID | 5171132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 657042 |
|---|
| End bp | 659687 |
|---|
| Gene Length | 2646 bp |
|---|
| Protein Length | 881 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640563159 |
|---|
| Product | pyruvate phosphate dikinase |
|---|
| Protein accession | YP_001244248 |
|---|
| Protein GI | 148269788 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0574] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase |
|---|
| TIGRFAM ID | [TIGR01828] pyruvate, phosphate dikinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.475714 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGA AATACGTGTA CTTCTTCGCA AACGGTAAGG CAGAAGGCCG AGCGGACATG
AAAGATATCC TCGGTGGAAA AGGTGCCAAC CTCGCAGAGA TGACCAACCT TGGAATTCCT
GTTCCTCCCG GATTCACCAT TTCTGCGGAA GTTTGTAAGT ACTACTACGA CCACGGAAGA
ACTTATCCAG AAGAACTGAA AGAACAGGTT GAAGAGGCAA TGAGGAGACT CGAGGAGGTT
ACCGGGAAAA AGTTCGGTGA CCCCAACAAT CCACTCCTTG TCTCCGTCAG ATCTGGTGCA
GCCATTTCAA TGCCTGGAAT GATGGACACC GTTCTCAATC TTGGTCTCAA CGATGAGACA
GTGAAAGGTC TTGCAAAACT GACTAACAAC GAAAGGTTTG CCTACGACGC TTACAGAAGA
TTCCTTCAGA TGTTCGGTGA TGTGGTTCTG AAGATACCTC ACGAGAAATT CGAAAAGGCA
CTCGAAGAAC TCAAGAAGGA AAAAGGTGTG AAGCTCGACA CCGAACTGGA TGCAGAAGAC
CTCAAAAAAC TCGTTGAAAG ATACAAACAG ATCTACAAGG AAGAAGGAAA AGAATTTCCG
CAGGATCCCT GGAAACAGCT CTGGCTTGCG ATCGATGCGG TGTTCGGTAG CTGGATGAAC
GAGAGAGCTA TCAAGTACAG AGAAATTCAC GGAATCAAAG AGGGAGATCT CCTCGGTACG
GCCGTGAACA TCGTCGCGAT GGTCTTTGGA AACATGGGAG AAGACTCCGG AACGGGTGTC
GCTTTCACAA GAGACCCGAA CACTGGAGAG AAGAAACCTT ATGGAGAGTT CCTGCCCAAC
GCCCAGGGTG AGGACGTTGT TGCGGGTATC AGAACCCCCC TCAAACTTGA AGAGTTGAAG
AACAGAATGC CGGAGGTCTA CAATCAGCTC CTTGAAATAA TGGAAAGACT CGAAAAACAC
TACAGAGACA TGCAGGACAT CGAGTTCACC ATCGAAAAAG GGAAACTCTA CCTGCTTCAG
ACAAGAAGTG GAAAGAGAAC ATCTCAGGCA GCTATCAGGA TCGCCGTTGA CATGGTCCAC
GAAGGACTCA TCACCAAAGA GGAAGCTATT CTCAGAGTGA GACCTGAAGA CGTCGAACAG
GTGCTTCATC CTGTGTTCGA TCCAAAAGAA AAGGCCCAGG CAAAAGTCAT CGCGAAAGGG
CTTCCTGCGT CTCCAGGTGC TGCAACGGGT AAGGTCGTTT TCAACGCCAA GAAAGCCGAA
GAACTTGGTA AAGCAGGTGA ACAGGTTATT CTTGTGAGAC CTGAAACCAG CCCCGAAGAC
GTCGGAGGAA TGGCCGTTGC ACAGGGAATT CTGACCTCCA GAGGAGGAAT GACCTCTCAC
GCTGCCGTTG TCGCGAGAGG AATGGGTAAG CCAGCAGTCG TCGGAGCAGA ATCCATAGAA
GTCCATCCTG AGGAAGGCTA CTTCAAAGTG GGAGACGTCG TTGTAAAAGA AGGAGAATGG
ATCTCAATCG ATGGAACGAC CGGTGAGGTT CTCCTTGGAA AAGTGACAAC AATAAAACCA
CAGGGTCTTG AAGGACCAGT CGCAGAACTT CTGCAGTGGG CCGATGAGAT CAGAAGACTC
GGTGTGAGAA CCAACGCAGA TATACCGAGA GACGCGGAAA TTGCGAGAAA ATTCGGTGCT
GAAGGAATTG GGCTCTGCAG AACAGAACAC ATGTTCTTCG AAAAGGATAG AATACCCAAG
GTTAGAAGGA TGATCCTCGC AAAGACAAAA GAAGAAAGAG AAAAGGCTCT GGATGAACTT
CTGCCACTTC AGAAAGAGGA CTTCAAAGGA TTGTTCAGGG TGATGAAAGG ACTTCCTGTC
ACCATAAGGC TCATAGATCC TCCTCTTCAC GAATTCCTGC CGCAAGAAGA TGAACAGATC
AAGGAAGTTG CCGAACAGAT GGGAGTCTCC TTTGAGGAAC TCAAGAACGT CGTGGAGAAT
CTCAGAGAAC TCAACCCGAT GCTCGGACAC AGAGGTTGTA GGCTCACCAT CACCTATCCT
GAGATCGCTG TGATGCAGAC CAAAGCAATA ATTGGAGCGG CCATCGAACT CAAGAAAGAG
GAAGGAATAG ATGTGATACC TGAAATCATG ATTCCTCTTG TGGGACACGT TAACGAACTC
AGGTACCTGA AGAAGATCAT CAAGGAAACG GCCGACGCTC TCATAAAAGA AGCTGGTGTC
GAGCTCACTT ACAAGATCGG AACCATGATC GAAGTTCCAA GGGCTGCTGT CACCGCCCAT
CAGATAGCGG AAGAAGCTGA ATTCTTCAGC TTCGGTACCA ACGACCTCAC ACAGATGACC
TTCGGATTCA GCCGAGACGA CGTTGGAAAG TTCCTGCCTG AGTACCTTGA AAAGGGCATC
CTCGAACACG ATCCGTTCAA GACGCTGGAC TACGACGGTG TTGGAGAACT GGTGAGGATG
GGTAAAGAGA AAGGAAGAAG CACAAGACCC GATCTCAAAG TTGGCGTCTG TGGAGAACAC
GGTGGAGATC CGAGATCCAT ACTGTTCTTC GACAAGATCG GACTCGACTA CGTTTCCTGT
TCGCCGTACA GAGTACCCGT TGCCAGACTT GCAGCAGCTC AGGCAGCTCT CAAAAACAAG
AAATAA
|
|---|
| Protein sequence | MAKKYVYFFA NGKAEGRADM KDILGGKGAN LAEMTNLGIP VPPGFTISAE VCKYYYDHGR
TYPEELKEQV EEAMRRLEEV TGKKFGDPNN PLLVSVRSGA AISMPGMMDT VLNLGLNDET
VKGLAKLTNN ERFAYDAYRR FLQMFGDVVL KIPHEKFEKA LEELKKEKGV KLDTELDAED
LKKLVERYKQ IYKEEGKEFP QDPWKQLWLA IDAVFGSWMN ERAIKYREIH GIKEGDLLGT
AVNIVAMVFG NMGEDSGTGV AFTRDPNTGE KKPYGEFLPN AQGEDVVAGI RTPLKLEELK
NRMPEVYNQL LEIMERLEKH YRDMQDIEFT IEKGKLYLLQ TRSGKRTSQA AIRIAVDMVH
EGLITKEEAI LRVRPEDVEQ VLHPVFDPKE KAQAKVIAKG LPASPGAATG KVVFNAKKAE
ELGKAGEQVI LVRPETSPED VGGMAVAQGI LTSRGGMTSH AAVVARGMGK PAVVGAESIE
VHPEEGYFKV GDVVVKEGEW ISIDGTTGEV LLGKVTTIKP QGLEGPVAEL LQWADEIRRL
GVRTNADIPR DAEIARKFGA EGIGLCRTEH MFFEKDRIPK VRRMILAKTK EEREKALDEL
LPLQKEDFKG LFRVMKGLPV TIRLIDPPLH EFLPQEDEQI KEVAEQMGVS FEELKNVVEN
LRELNPMLGH RGCRLTITYP EIAVMQTKAI IGAAIELKKE EGIDVIPEIM IPLVGHVNEL
RYLKKIIKET ADALIKEAGV ELTYKIGTMI EVPRAAVTAH QIAEEAEFFS FGTNDLTQMT
FGFSRDDVGK FLPEYLEKGI LEHDPFKTLD YDGVGELVRM GKEKGRSTRP DLKVGVCGEH
GGDPRSILFF DKIGLDYVSC SPYRVPVARL AAAQAALKNK K
|
|---|
| |