| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0633 |
|---|
| Symbol | |
|---|
| ID | 5170604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 635786 |
|---|
| End bp | 637720 |
|---|
| Gene Length | 1935 bp |
|---|
| Protein Length | 644 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640563140 |
|---|
| Product | Alpha-N-arabinofuranosidase |
|---|
| Protein accession | YP_001244229 |
|---|
| Protein GI | 148269769 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3534] Alpha-L-arabinofuranosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAAAAGA ATGATTTGAG GGGTGAGAAA GTGAAAAGAT TCCTGTTTGT TTTGACTTTA
ACAATTTCGG TCCTCCTCGT CGGAGAGGTT CAACATGTGT TGAGGATTGA CTTTTCTCGG
CAGGGGCCGG AAATTCCAGA GACATTTCAT GGAATATTTT TCGAAGATAT AAATCACGCA
GTCGATGGAG GACTTTACGT AGAACTTGTG AGAAACAGAT CGTTTGAGCA GAAAACGAGA
AAGTACGAAG GGTGGCAGAT CGAAAGAGGA GATTCTGTGA AATCTTCCAT AGAAGAAACG
TATCCTCTCA ACGAAAACAA CACTCATTAT TTTGAATTGA AATTTCCCGA AACAGATAGA
GCGACTCTCA CGAACCTGGG ATACGGTGGA ATTGTGGTGT TTCAGGGTCA GGAATACACC
TTCTCCACCT ATCTCAGTGG TGATTTCACA GGAACGATCA CCGCTTTGAT CACTGATGAC
AACGAAGTTC TGGCTTCAGG GAATGTTTTG CTTCATCAAC CGGCTGGTGG CTGGAAAAAG
TACATGTTGA ATCTCATTCC CACAAAGACA TCCACCAACT CGAGACTTTC GATTTCCATT
CTGGGCAGTG GAACCCTCAG AATCGACATG GTTTCTCTGA TGCCCAGAAA GAACTGGAAC
GGCATGAGAG AAGATCTTTT GAGAATGCTC GAGGATCTAA AGCCAGGTTT TATAAGGTTT
CCGGGAGGAT GTCTGGTTCA GGGTAACACC CTGGAGAACG CGTACCGATG GAAAGAGAGC
ATTGGATCAG TTGAACAGAG GAAGACAAAG TGGAATTTCT GGGGATACTA TCAGACACTT
GGTATCGGTT TTTACGAGTA TTTGCTCCTC TGTGAAAGAC TGGAAGCAGA ACCTGTTCCT
ATATTCAATC CTGGTATATC TTTCCAGATA GAATCACCGG AATACGCTTC CGAAGAAGAG
CTCAAAGAAT GGATTCAAGA CGTTCTAGAT TTCCTCGAGT TTGCCAACGA TGCAACAGAC
ACGTACTGGG GAGGTGTCAG AGCGTCTCTT GGTCATCCAG AACCCTTCAA CGTGAAATAC
ATTGGTGTTG GTAATGAAAA CTGGGGGCCA AGATACTGGG AGAATTTCGA AAAGTTCAGA
GAAGCGATAA AAAAAAGATA TCCCGATGTA AAGATCATAT TCAGCGGACC GCCTTCCTAC
GAAGGAACCG ATTTCAGACA GGCGTGGCGC TGGGCAAGGG AAAACAACGT GGAAATCTTC
GACGAGCACA TCTATGCCTC ACCGGAATGG ATGCTGGCAA ACACTGATAG ATACAACAGA
TATGACAGAA ACGGTCCGAA AGTTATGCTT GGAGAGTACG CGGCGCATAC AGATGGAAAG
AGAAACAACT GGCAGGCAGC ACTCGCTGAA GCAGCTTTTC TTACAGGAGT CGAGAGGAAT
TCCGATGTTG TCATAATGGC TTCCTACGCT CCCCTCTTCA ACAGAGTGGG CTGGTCTCAG
TGGGTACCGG ATCTGATCTG GTTCGATGGA TACAGGGTTT TCGGTACACC GAGTTACTAT
GTCCAGAGAG TTTTCGCTGA GAACAGAGGA GATGTGGTGA TTCACTCCGA ACTCACCAAC
GAAGAGTACA GGATGTTCGG CTACAGATAC AAACATCTCT ATCATGTAGT AACGTACGAT
GAAAAATCTA AGGAATTGAT CATAAAAGTT GTCAATCCCT GGCCTGAAGA TAGGACCGTT
CGTCTGGAAA TTCAGGGAAT TGGGCTCGAA GGAAATGGAA AGGAGATTCT CATCAGTGGT
GGCCCAAAGG ATGAAAACAG TTTCGATGAA CTAAAGATCG TTCCAAAAGA AAGAATAATA
ACCGGTCTCA ACACTTCCTT TGAATACACC TTTAAAGCTT ACACAGTGAC GGTTTTGAGA
TTGAAGGTGA GATAA
|
|---|
| Protein sequence | MEKNDLRGEK VKRFLFVLTL TISVLLVGEV QHVLRIDFSR QGPEIPETFH GIFFEDINHA
VDGGLYVELV RNRSFEQKTR KYEGWQIERG DSVKSSIEET YPLNENNTHY FELKFPETDR
ATLTNLGYGG IVVFQGQEYT FSTYLSGDFT GTITALITDD NEVLASGNVL LHQPAGGWKK
YMLNLIPTKT STNSRLSISI LGSGTLRIDM VSLMPRKNWN GMREDLLRML EDLKPGFIRF
PGGCLVQGNT LENAYRWKES IGSVEQRKTK WNFWGYYQTL GIGFYEYLLL CERLEAEPVP
IFNPGISFQI ESPEYASEEE LKEWIQDVLD FLEFANDATD TYWGGVRASL GHPEPFNVKY
IGVGNENWGP RYWENFEKFR EAIKKRYPDV KIIFSGPPSY EGTDFRQAWR WARENNVEIF
DEHIYASPEW MLANTDRYNR YDRNGPKVML GEYAAHTDGK RNNWQAALAE AAFLTGVERN
SDVVIMASYA PLFNRVGWSQ WVPDLIWFDG YRVFGTPSYY VQRVFAENRG DVVIHSELTN
EEYRMFGYRY KHLYHVVTYD EKSKELIIKV VNPWPEDRTV RLEIQGIGLE GNGKEILISG
GPKDENSFDE LKIVPKERII TGLNTSFEYT FKAYTVTVLR LKVR
|
|---|
| |