| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0629 |
|---|
| Symbol | |
|---|
| ID | 5171120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 630062 |
|---|
| End bp | 630700 |
|---|
| Gene Length | 639 bp |
|---|
| Protein Length | 212 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640563136 |
|---|
| Product | L-ribulose-5-phosphate 4-epimerase |
|---|
| Protein accession | YP_001244225 |
|---|
| Protein GI | 148269765 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
|---|
| TIGRFAM ID | [TIGR00760] L-ribulose-5-phosphate 4-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 50 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACGAAA AAGAAAGGAA AGAGCTATAC AATGCCCATC TTCTGTTGGA AAAATACGGT
CTTGTCGCTT ACACAAGCGG TAACGTGAGT GTGAGAATCG GTGATCATGT TCTGATAAAG
CCCTCCGGTG TTCCATACAC CGAGCTGAAA CCAGAGGACT TCGTCGTGGT GGACCTTGAA
GGAAACGTGA TCGAGGGAGA GAAGAAACCC TCCGTCGATA CAGCCACACA TCTGTATCTC
TACAAACACC TCGACTGGGC AAAATCCGTG ATTCACACTC ATTCAACATT CGCCATGGTG
TGGGCAATTC TCGAAAAATC AATCCCCGTT CTTTGCACGG CACATGCGGA TGTTTTCGGA
GAGGAGATTC CTCTTACAGA ATACGCTCCT GTAGGATCCG AAGCGATTGG GAAAGCCGTC
CTGAAAGTGA TTGGAAAATC CGGTGCTGTT CTTCTCAGAA AACACGGTGT TATGATCGTA
GGAACCTCCG TGGACGATGC GGTGAAAAAG GCGATTTTCC TTGAGGAGGT AGCAAAGGCA
GCGTACTTTG CGACACTTGC AGGAGAGCCC ACATCATTAC CACCTGACGA GGTGGATCGT
CTCTACAATC AGTACCACAC CAAGTACGGT CAGAAGTGA
|
|---|
| Protein sequence | MYEKERKELY NAHLLLEKYG LVAYTSGNVS VRIGDHVLIK PSGVPYTELK PEDFVVVDLE
GNVIEGEKKP SVDTATHLYL YKHLDWAKSV IHTHSTFAMV WAILEKSIPV LCTAHADVFG
EEIPLTEYAP VGSEAIGKAV LKVIGKSGAV LLRKHGVMIV GTSVDDAVKK AIFLEEVAKA
AYFATLAGEP TSLPPDEVDR LYNQYHTKYG QK
|
|---|
| |