| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tpet_0595 |
|---|
| Symbol | |
|---|
| ID | 5170574 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermotoga petrophila RKU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009486 |
|---|
| Strand | - |
|---|
| Start bp | 591989 |
|---|
| End bp | 593272 |
|---|
| Gene Length | 1284 bp |
|---|
| Protein Length | 427 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640563103 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_001244192 |
|---|
| Protein GI | 148269732 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000619396 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCATAG TGCTCATTGC CTTCGCTGTT TTTCTGATGC TTGGCATGCC TGTTGCCTTC
GCTATAGGAA TATCCGGATT CCTCTGGTTT CTTCAGCATC CAGAACTTCC CATCACTATT
CCGATACAGA GACTGCTTTC TCAAACAGTG AATTTCACGC TGCTTGCTAT TCCCATGTTC
ATTGTGGCTG GTAATGTGAT GAATTCTGCC GGTGTGACGA GAAGACTCCT TGATTTTGCC
TCTACCCTCG TTGGTCACAT GAGAGGAGGA CTCGGTCAGG TTTCAGCTGT TCTTTCCACG
TTGATGGGAG GAGTTTCCGG ATCCAGTATT GCGGACGCGG CGATGGAAAC AAGGATGCTC
GGTCCAGAGA TGCTCAGACG AGGCTATCCA AGAGGATTCG CTGTTGCCGT GAACGTCTGG
ACGTCCCTGA TCACTCCTAT TATCCCTCCC GGTATCGCTT TCATCATTTA CGGTACAATC
GGTCAGGTCT CCATAGGAAG GCTCTTTGCG GCGGGAATAG GACCTGGTCT TCTTTTGATG
GTGGTTTACA TGATCACCAT ATGGTTTGTT GCTAAAAGAT TGAACCTTGC ACCTGAACGA
GAGAAACGAG CACCGATAAA CGAAGTTTTC AGATCTCTTG GAAAGAGTAT CTGGGCTCTT
ATGTTTCCGG TTTTGCTGAT TGTGGGTTTG AGAGGCGGTA TCTTCACCCC TTCGGAGGTT
GGTTCTTTCG CAGTTTTGTA CGGAATGCTG GTGGGATTCA TAATACACAG GGAGATGTCT
TTCAAAACCT TTTATTGGGA AACCCTGGAG AATTCTCTTG GTGATATCGG TAGTGTGATG
TTCATACTTT CAATGTCTAC AATCTTTGGT TACGGTATGA TATGGGAAAG GATACCGGAA
AAGCTCGCGG AATTTCTCCT TGGAATATCT TCCAATCCAA ACGTTCTGAT GATAATGATC
TCCTTGTTCC TGGTCTTCGC TGGTTTGTTT GTGGACGCAA CGGCTTTGAT TCTCATGCTT
ACAGCAATCC TGCTTCCTGT GGCAAGACAG GTGGGAATAG ATCCCGTTCA CTTCGGTTTG
GTGTTCATTC TATCTGCTGC TATGGGTAAT CAGACACCGC CTGTAGGTGC TTCCATGTAT
GCCGGTTGCT CTGTGCTCGG TGCAACCATA GAAGAATACA TACAGGCATC CTGGCCTTTT
CTGTTTGTGG CGATACTGGC AATATTTCTG GTTATTTTCT TTCCGCAGAT CGTACTGTTC
ATTCCGAATC TCATCTTTGG ATAA
|
|---|
| Protein sequence | MIIVLIAFAV FLMLGMPVAF AIGISGFLWF LQHPELPITI PIQRLLSQTV NFTLLAIPMF
IVAGNVMNSA GVTRRLLDFA STLVGHMRGG LGQVSAVLST LMGGVSGSSI ADAAMETRML
GPEMLRRGYP RGFAVAVNVW TSLITPIIPP GIAFIIYGTI GQVSIGRLFA AGIGPGLLLM
VVYMITIWFV AKRLNLAPER EKRAPINEVF RSLGKSIWAL MFPVLLIVGL RGGIFTPSEV
GSFAVLYGML VGFIIHREMS FKTFYWETLE NSLGDIGSVM FILSMSTIFG YGMIWERIPE
KLAEFLLGIS SNPNVLMIMI SLFLVFAGLF VDATALILML TAILLPVARQ VGIDPVHFGL
VFILSAAMGN QTPPVGASMY AGCSVLGATI EEYIQASWPF LFVAILAIFL VIFFPQIVLF
IPNLIFG
|
|---|
| |